Detailed information NTG0358427

Bioinformatically predicted

Overview

• Name: ruvB
• Type: Machinery gene
• Locus tag: GRI05_RS00315
• Genome accession: NZ_CP047248
• Coordinates: 52889..53890 (+)
• Length: 333 a.a.
• NCBI ID: WP_004195448.1
• Uniprot ID: A0A0H3MST2
• Organism: Streptococcus suis strain LSM178
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 47889..58890

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GRI05_RS00285 (GRI05_00290)	-	47939..48517 (+)	579	WP_011921662.1	CPBP family intramembrane glutamic endopeptidase	-
GRI05_RS00290 (GRI05_00295)	-	48532..48960 (+)	429	WP_014636188.1	Msa family membrane protein	-
GRI05_RS00295 (GRI05_00300)	-	48953..49825 (+)	873	WP_011921665.1	ABC transporter ATP-binding protein	-
GRI05_RS00300 (GRI05_00305)	-	49831..50604 (+)	774	WP_012775420.1	membrane protein	-
GRI05_RS00305 (GRI05_00310)	-	50607..52319 (+)	1713	WP_012774887.1	ABC transporter ATP-binding protein	-
GRI05_RS00310	-	52421..52594 (+)	174	WP_011921669.1	hypothetical protein	-
GRI05_RS00315 (GRI05_00315)	ruvB	52889..53890 (+)	1002	WP_004195448.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
GRI05_RS00320 (GRI05_00320)	-	53890..54636 (+)	747	WP_011921670.1	GNAT family N-acetyltransferase	-
GRI05_RS00325 (GRI05_00325)	-	54638..55273 (+)	636	WP_011921671.1	HAD-IA family hydrolase	-
GRI05_RS00330 (GRI05_00330)	comR	55520..56419 (+)	900	WP_012774888.1	helix-turn-helix domain-containing protein	Regulator
GRI05_RS00335 (GRI05_00335)	-	56824..57987 (+)	1164	WP_011921673.1	IS110 family transposase	-

Sequence

Protein

• Length: 333 a.a.
• Molecular weight: 37613.12 Da
• Isoelectric Point: 4.4673

>NTDB_id=358427 GRI05_RS00315 WP_004195448.1 52889..53890(+) (ruvB) [Streptococcus suis strain LSM178]
MTNRILDMEQMQDEEYVERTLRPQKLNEYIGQDKVKDQLKIFIEAAKLRDEALDHTLLFGPPGLGKTTMAFVIANELGVN
IKQTSGPVIEKAGDLVALLNDLEPGDVLFIDEIHRMPMAVEEILYSAMEDFYIDIMIGAGEASRSVHLELPPFTLIGATT
RAGMLSNPLRARFGITGHMEYYELADLTEIVERTADIFDMEITHEAAIELARRSRGTPRIANRLLKRVRDFAQIMGDGLI
DDSITDKALTMLDVDREGLDYVDQKILRTMIEMYGGGPVGLNTLSVNIAEERETVEDMYEPYLIQQGFLMRTRTGRVATA
KAYEHLGYPYTEK

Nucleotide

• Length: 1002 bp

>NTDB_id=358427 GRI05_RS00315 WP_004195448.1 52889..53890(+) (ruvB) [Streptococcus suis strain LSM178]
ATGACAAATCGAATTTTAGATATGGAACAAATGCAGGACGAGGAATATGTCGAGCGTACCCTGCGTCCGCAGAAATTAAA
CGAATACATCGGTCAGGACAAGGTTAAGGACCAGCTCAAAATCTTTATCGAGGCAGCCAAGCTCCGTGATGAAGCCTTGG
ACCATACCCTTCTGTTTGGACCTCCAGGTTTGGGGAAGACCACCATGGCCTTTGTCATCGCCAACGAACTGGGCGTTAAT
ATCAAGCAGACTAGTGGTCCTGTTATTGAAAAAGCAGGTGACTTGGTGGCCCTTCTCAACGACTTGGAGCCTGGCGACGT
CCTCTTTATCGATGAAATCCACCGTATGCCCATGGCGGTCGAGGAGATTCTCTACTCAGCCATGGAAGACTTCTACATCG
ACATCATGATTGGGGCTGGGGAGGCCAGTCGCTCCGTGCATTTGGAGTTGCCGCCTTTTACCCTGATTGGAGCGACCACT
CGTGCGGGTATGCTGTCCAATCCCCTGCGGGCCCGATTTGGGATTACCGGTCACATGGAGTATTACGAACTGGCTGATTT
GACGGAGATTGTCGAGCGGACGGCGGATATCTTTGACATGGAGATTACTCATGAAGCTGCTATTGAGCTGGCTCGTCGGT
CTCGTGGAACTCCCCGTATCGCCAACCGTCTGCTCAAGCGGGTGCGGGATTTCGCACAGATTATGGGCGACGGCCTGATT
GACGATAGCATTACGGATAAGGCCCTGACTATGCTGGATGTGGACCGAGAGGGGCTGGACTATGTGGACCAGAAGATTCT
CCGCACCATGATTGAGATGTACGGTGGCGGTCCCGTCGGCCTCAACACCCTGTCGGTCAATATTGCCGAGGAGCGTGAGA
CGGTGGAGGACATGTACGAACCTTACCTGATTCAGCAGGGCTTCCTCATGCGGACGCGGACAGGGCGGGTTGCGACAGCC
AAGGCTTACGAGCACTTGGGTTATCCCTATACGGAAAAATAA

Domains

Predicted by InterProScan.

• RuvB C-terminal winged helix domain (WHD_RuvB) (257-326)

• RuvB AAA lid domain (AAA_lid_4) (182-255)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (21-179)

3D structure

• AlphaFold DB: A0A0H3MST2

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvB	Streptococcus pneumoniae TIGR4	90.332	99.399	0.898
ruvB	Streptococcus pneumoniae R6	90.03	99.399	0.895
ruvB	Streptococcus pneumoniae D39	90.03	99.399	0.895
ruvB	Bacillus subtilis subsp. subtilis str. 168	58.589	97.898	0.574
ruvB	Helicobacter pylori 26695	51.064	98.799	0.505
ruvB	Synechocystis sp. PCC 6803	50.479	93.994	0.474