Detailed information NTG0358398

Bioinformatically predicted

Overview

• Name: pilM
• Type: Machinery gene
• Locus tag: E5843_RS03585
• Genome accession: NZ_CP039383
• Coordinates: 788924..789982 (+)
• Length: 352 a.a.
• NCBI ID: WP_134672720.1
• Uniprot ID: A0A4Z1R123
• Organism: Luteimonas yindakuii strain S-1072
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 783924..794982

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
E5843_RS03570 (E5843_04035)	-	784844..785464 (+)	621	WP_136411850.1	hypothetical protein	-
E5843_RS03575 (E5843_04040)	-	785437..786093 (-)	657	WP_136411851.1	hypothetical protein	-
E5843_RS03580 (E5843_04045)	-	786163..788670 (-)	2508	WP_141065680.1	penicillin-binding protein 1A	-
E5843_RS03585 (E5843_04050)	pilM	788924..789982 (+)	1059	WP_134672720.1	pilus assembly protein PilM	Machinery gene
E5843_RS03590 (E5843_04055)	-	789982..790623 (+)	642	WP_134672721.1	PilN domain-containing protein	-
E5843_RS03595 (E5843_04060)	pilO	790638..791291 (+)	654	WP_134674565.1	type 4a pilus biogenesis protein PilO	-
E5843_RS03600 (E5843_04065)	-	791293..791835 (+)	543	WP_134672722.1	pilus assembly protein PilP	-
E5843_RS03605 (E5843_04070)	pilQ	791849..793813 (+)	1965	WP_134672723.1	type IV pilus secretin PilQ	-
E5843_RS03610 (E5843_04075)	-	793946..794941 (+)	996	WP_136411853.1	AAA family ATPase	-

Sequence

Protein

• Length: 352 a.a.
• Molecular weight: 37713.21 Da
• Isoelectric Point: 4.4558

>NTDB_id=358398 E5843_RS03585 WP_134672720.1 788924..789982(+) (pilM) [Luteimonas yindakuii strain S-1072]
MGLITKNQSPLVGVDISSTAVKLLQLSRSGERYRVEHYAVEPLPPNAVVEKNIVEVEAVGDAIRRAMSRSGSKAKHAAAA
VAGSAVITKTIPMPAELDEDEMESAVELEAINYIPYPIDEVNLDFEVLGPVPGNPEMVQVLLAASRSENVEMRASALELG
GLTARVMDVEAFAIENAYALLAGGLNAPHDGIVALVDVGATMTTLNILRGGRSLYTREQVFGGKQLTDEVMRRYGLSYEE
AGLAKRQGGLPESYEIEVLEPFKEALVQQISRLLQFFYAGSEFNRVDHVVLAGGCASIPGVPEMVEEQLGVQTVVANPLA
QMTLGPRVQAHALAQDAPALMIACGLAMRSFD

Nucleotide

• Length: 1059 bp

>NTDB_id=358398 E5843_RS03585 WP_134672720.1 788924..789982(+) (pilM) [Luteimonas yindakuii strain S-1072]
GTGGGGCTCATCACAAAAAATCAGTCGCCACTCGTGGGCGTCGATATCAGTTCGACTGCGGTCAAGCTTCTGCAGCTGTC
GCGCTCGGGCGAGCGCTACCGCGTCGAGCACTACGCGGTCGAGCCACTGCCGCCCAACGCGGTGGTGGAGAAGAACATCG
TCGAAGTCGAGGCGGTGGGTGATGCCATCCGTCGCGCGATGTCGCGCTCGGGTTCGAAGGCCAAGCACGCCGCTGCGGCC
GTGGCCGGTTCGGCGGTGATCACCAAGACCATCCCGATGCCCGCCGAGCTCGACGAGGACGAGATGGAATCGGCCGTCGA
GCTCGAAGCCATCAACTACATCCCGTATCCGATCGACGAAGTGAACCTCGACTTCGAGGTGCTTGGTCCGGTTCCCGGCA
ATCCGGAGATGGTGCAGGTGCTGCTGGCGGCCTCGCGTTCCGAGAACGTCGAGATGCGTGCCTCCGCGCTCGAGCTTGGC
GGCCTCACCGCCAGGGTGATGGACGTCGAGGCCTTCGCGATCGAGAACGCCTACGCGCTGCTGGCGGGTGGCCTCAACGC
GCCGCACGACGGCATCGTCGCCCTGGTCGACGTCGGCGCGACGATGACCACGCTCAACATCCTGCGCGGTGGCCGCAGCC
TCTACACCCGTGAACAGGTGTTCGGTGGCAAGCAGCTGACCGACGAGGTGATGCGCCGCTACGGCCTCAGCTACGAGGAG
GCGGGCCTGGCCAAGCGCCAGGGTGGCCTGCCCGAGAGCTACGAGATCGAGGTGCTCGAACCGTTCAAGGAAGCGCTGGT
CCAGCAGATCAGCCGCCTGCTGCAGTTCTTCTACGCCGGCAGCGAATTCAACCGCGTCGACCATGTCGTGCTGGCCGGTG
GCTGCGCGTCGATCCCCGGCGTGCCGGAGATGGTCGAGGAACAGCTGGGCGTGCAGACGGTGGTCGCCAACCCGCTGGCG
CAGATGACGCTCGGGCCGCGCGTGCAGGCGCACGCACTGGCCCAGGACGCCCCCGCGCTGATGATCGCCTGTGGCCTGGC
CATGAGGAGCTTCGACTGA

Domains

Predicted by InterproScan.

• Type IV pilus assembly protein PilM; (PilM_2) (13-351)

3D structure

• AlphaFold DB: A0A4Z1R123

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilM	Acinetobacter baumannii D1279779	51.136	100	0.511
comM	Acinetobacter nosocomialis M2	50.852	100	0.509
comM	Acinetobacter baylyi ADP1	50.867	98.295	0.5
pilM	Legionella pneumophila strain ERS1305867	45.429	99.432	0.452