Detailed information    

insolico Bioinformatically predicted

Overview

Name   ysxA/radC   Type   Machinery gene
Locus tag   GRT08_RS13170 Genome accession   NZ_CP047234
Coordinates   2682066..2682761 (-) Length   231 a.a.
NCBI ID   WP_007408165.1    Uniprot ID   A7Z793
Organism   Bacillus amyloliquefaciens strain FJ4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2677066..2687761
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GRT08_RS13140 (GRT08_12950) - 2677081..2677884 (-) 804 WP_071391546.1 M23 family metallopeptidase -
  GRT08_RS13145 (GRT08_12955) minD 2678012..2678815 (-) 804 WP_060674730.1 septum site-determining protein MinD -
  GRT08_RS13150 (GRT08_12960) minC 2678818..2679498 (-) 681 WP_003152653.1 septum site-determining protein MinC -
  GRT08_RS13155 (GRT08_12965) mreD 2679552..2680070 (-) 519 WP_003152650.1 rod shape-determining protein MreD -
  GRT08_RS13160 (GRT08_12970) mreC 2680067..2680930 (-) 864 WP_003152649.1 rod shape-determining protein MreC -
  GRT08_RS13165 (GRT08_12975) mreB 2680961..2681974 (-) 1014 WP_003152647.1 cell shape-determining protein MreB -
  GRT08_RS13170 (GRT08_12980) ysxA/radC 2682066..2682761 (-) 696 WP_007408165.1 DNA repair protein RadC Machinery gene
  GRT08_RS13175 (GRT08_12985) - 2682793..2683362 (-) 570 WP_070082167.1 nucleoside triphosphate pyrophosphatase -
  GRT08_RS13180 (GRT08_12990) - 2683503..2684504 (-) 1002 WP_070082168.1 SPOR domain-containing protein -
  GRT08_RS13185 (GRT08_12995) comC 2684631..2685383 (-) 753 WP_202735648.1 A24 family peptidase Machinery gene
  GRT08_RS13190 (GRT08_13000) - 2685523..2686815 (-) 1293 WP_071391542.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -

Sequence

Protein


Download         Length: 231 a.a.        Molecular weight: 26080.30 Da        Isoelectric Point: 9.1909

>NTDB_id=358381 GRT08_RS13170 WP_007408165.1 2682066..2682761(-) (ysxA/radC) [Bacillus amyloliquefaciens strain FJ4]
MIIRDLPLKLRDFPEKEKPRERLLHFGAEHLSNNELLAILLRTGTKHESVMNLAHRLLRTFDGLRLLKGASAQELSSIPG
IGTVKAVQILAAIELGSRIHKTSAGEHCVIRSPEDGAKYVMEDMRFLSQEHFVCLYLNTKNQVIHKRTVFIGSLNSSIVH
PREVFKEAFKRSAASFICVHNHPSGDPTPSREDIEVTRRLFECGNLIGIELLDHLVIGDKKFVSLKEKGYL

Nucleotide


Download         Length: 696 bp        

>NTDB_id=358381 GRT08_RS13170 WP_007408165.1 2682066..2682761(-) (ysxA/radC) [Bacillus amyloliquefaciens strain FJ4]
TTGATCATCCGTGATCTGCCGTTAAAATTAAGAGATTTCCCCGAAAAAGAAAAACCGAGAGAGCGGCTTCTGCACTTCGG
AGCCGAACATCTCTCTAACAATGAATTGCTCGCCATCCTGCTGCGGACGGGAACGAAACATGAGTCCGTCATGAACCTCG
CTCACCGGCTGCTGCGGACGTTTGACGGGCTGCGCCTGTTAAAAGGCGCCTCTGCCCAGGAGCTTTCCAGCATTCCGGGA
ATCGGCACGGTGAAAGCCGTTCAGATTCTTGCCGCAATTGAGCTGGGGAGCCGCATTCATAAGACATCCGCCGGGGAGCA
TTGCGTCATCCGCTCTCCGGAAGACGGGGCGAAGTATGTGATGGAGGATATGCGCTTTTTATCCCAGGAGCATTTTGTCT
GTTTATATTTAAATACCAAAAATCAAGTCATTCATAAACGCACCGTTTTTATCGGAAGTCTGAATTCATCTATTGTCCAC
CCGCGGGAGGTGTTTAAAGAAGCTTTCAAACGATCCGCCGCGTCCTTCATTTGCGTTCATAATCATCCTTCAGGAGATCC
TACACCGAGCAGGGAAGATATAGAGGTAACCAGGCGGCTTTTTGAGTGCGGAAATTTAATCGGCATCGAGCTGCTGGATC
ATTTGGTCATTGGTGATAAAAAATTTGTGAGTTTAAAGGAAAAAGGATATTTGTAA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(11-87)

RadC-like JAB domain (RadC)

(110-229)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7Z793

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

87.879

100

0.879
  radC Streptococcus pneumoniae TIGR4

49.524

90.909

0.45
  radC Streptococcus pneumoniae R6

49.048

90.909

0.446
  radC Streptococcus pneumoniae D39

49.048

90.909

0.446
  radC Streptococcus gordonii str. Challis substr. CH1

47.143

90.909

0.429