Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | PSL001_RS04760 | Genome accession | NZ_CP039378 |
| Coordinates | 918117..918644 (-) | Length | 175 a.a. |
| NCBI ID | WP_002833866.1 | Uniprot ID | A0A0R2H8I2 |
| Organism | Pediococcus pentosaceus strain SL001 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 913117..923644
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PSL001_RS04740 (PSL001_04740) | dnaB | 913750..915147 (-) | 1398 | WP_002833870.1 | replicative DNA helicase | - |
| PSL001_RS04745 (PSL001_04745) | rplI | 915196..915648 (-) | 453 | WP_060743480.1 | 50S ribosomal protein L9 | - |
| PSL001_RS04750 (PSL001_04750) | - | 915654..917654 (-) | 2001 | WP_023439729.1 | DHH family phosphoesterase | - |
| PSL001_RS04755 (PSL001_04755) | rpsR | 917857..918093 (-) | 237 | WP_002833867.1 | 30S ribosomal protein S18 | - |
| PSL001_RS04760 (PSL001_04760) | ssb | 918117..918644 (-) | 528 | WP_002833866.1 | single-stranded DNA-binding protein | Machinery gene |
| PSL001_RS04765 (PSL001_04765) | rpsF | 918680..918964 (-) | 285 | WP_002833865.1 | 30S ribosomal protein S6 | - |
| PSL001_RS04770 (PSL001_04770) | gyrA | 919210..921690 (-) | 2481 | WP_269668170.1 | DNA gyrase subunit A | - |
Sequence
Protein
Download Length: 175 a.a. Molecular weight: 19144.68 Da Isoelectric Point: 4.7512
>NTDB_id=358289 PSL001_RS04760 WP_002833866.1 918117..918644(-) (ssb) [Pediococcus pentosaceus strain SL001]
MINRTVLVGRLTRDPELRYTGSGAAVVTFTVAVNRQFTNSQGEREADFINCVMWRKAAENFANFTRKGSLVGIDGRIQTR
SYENQQGQRVYVTEVVAENFSLLESRSSSERRQGGENNFGNNQSAPSQQPTSSGNPFDGGQSNNSGAQQPNNSNPNDPFA
NGGQSIDISDDDLPF
MINRTVLVGRLTRDPELRYTGSGAAVVTFTVAVNRQFTNSQGEREADFINCVMWRKAAENFANFTRKGSLVGIDGRIQTR
SYENQQGQRVYVTEVVAENFSLLESRSSSERRQGGENNFGNNQSAPSQQPTSSGNPFDGGQSNNSGAQQPNNSNPNDPFA
NGGQSIDISDDDLPF
Nucleotide
Download Length: 528 bp
>NTDB_id=358289 PSL001_RS04760 WP_002833866.1 918117..918644(-) (ssb) [Pediococcus pentosaceus strain SL001]
ATGATTAACCGAACAGTGCTTGTCGGACGCCTAACAAGGGACCCTGAACTACGATATACAGGTAGTGGAGCTGCAGTAGT
AACTTTTACAGTTGCTGTTAATCGTCAGTTTACTAATTCACAAGGTGAACGCGAAGCTGACTTTATTAATTGTGTTATGT
GGCGTAAAGCTGCAGAAAACTTTGCTAACTTCACTCGGAAGGGTTCATTAGTTGGTATCGACGGACGGATTCAAACCCGT
TCTTATGAAAACCAACAAGGCCAACGAGTTTATGTTACCGAGGTTGTAGCCGAAAACTTCTCTCTTCTTGAATCACGTTC
ATCTTCTGAACGTCGTCAGGGTGGAGAAAATAATTTTGGCAATAATCAATCTGCCCCTTCACAACAACCAACATCATCCG
GAAATCCATTTGACGGAGGACAATCGAATAATAGTGGTGCACAACAACCTAACAATTCGAACCCTAATGACCCATTTGCT
AATGGCGGTCAGTCAATTGATATTTCTGACGATGATTTACCATTCTAA
ATGATTAACCGAACAGTGCTTGTCGGACGCCTAACAAGGGACCCTGAACTACGATATACAGGTAGTGGAGCTGCAGTAGT
AACTTTTACAGTTGCTGTTAATCGTCAGTTTACTAATTCACAAGGTGAACGCGAAGCTGACTTTATTAATTGTGTTATGT
GGCGTAAAGCTGCAGAAAACTTTGCTAACTTCACTCGGAAGGGTTCATTAGTTGGTATCGACGGACGGATTCAAACCCGT
TCTTATGAAAACCAACAAGGCCAACGAGTTTATGTTACCGAGGTTGTAGCCGAAAACTTCTCTCTTCTTGAATCACGTTC
ATCTTCTGAACGTCGTCAGGGTGGAGAAAATAATTTTGGCAATAATCAATCTGCCCCTTCACAACAACCAACATCATCCG
GAAATCCATTTGACGGAGGACAATCGAATAATAGTGGTGCACAACAACCTAACAATTCGAACCCTAATGACCCATTTGCT
AATGGCGGTCAGTCAATTGATATTTCTGACGATGATTTACCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
67.582 |
100 |
0.703 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
62.286 |
100 |
0.623 |
| ssb | Glaesserella parasuis strain SC1401 |
33.871 |
100 |
0.36 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
59.434 |
60.571 |
0.36 |