Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   E6B08_RS08230 Genome accession   NZ_CP039371
Coordinates   1724424..1726640 (+) Length   738 a.a.
NCBI ID   WP_136913563.1    Uniprot ID   -
Organism   Pseudomonas putida strain 1290     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1719424..1731640
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E6B08_RS08210 (E6B08_08210) - 1721288..1721911 (+) 624 WP_136913559.1 glutathione S-transferase -
  E6B08_RS08215 (E6B08_08215) - 1722056..1722988 (+) 933 WP_136913560.1 ABC transporter ATP-binding protein -
  E6B08_RS08220 (E6B08_08220) - 1722985..1723764 (+) 780 WP_136913561.1 ABC transporter permease -
  E6B08_RS08225 (E6B08_08225) - 1723774..1724280 (-) 507 Protein_1566 DUF2062 domain-containing protein -
  E6B08_RS08230 (E6B08_08230) comA 1724424..1726640 (+) 2217 WP_136913563.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  E6B08_RS08235 (E6B08_08235) exbB 1727066..1727701 (+) 636 WP_136913564.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  E6B08_RS08240 (E6B08_08240) - 1727698..1728132 (+) 435 WP_136913565.1 ExbD/TolR family protein -
  E6B08_RS08245 (E6B08_08245) lpxK 1728132..1729154 (+) 1023 WP_136913566.1 tetraacyldisaccharide 4'-kinase -
  E6B08_RS08250 (E6B08_08250) - 1729198..1729383 (+) 186 WP_003247142.1 Trm112 family protein -
  E6B08_RS08255 (E6B08_08255) kdsB 1729380..1730144 (+) 765 WP_136913567.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  E6B08_RS08260 (E6B08_08260) - 1730144..1730608 (+) 465 WP_136913568.1 low molecular weight protein-tyrosine-phosphatase -
  E6B08_RS08265 (E6B08_08265) murB 1730605..1731624 (+) 1020 WP_136913569.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 738 a.a.        Molecular weight: 80138.84 Da        Isoelectric Point: 9.2749

>NTDB_id=358219 E6B08_RS08230 WP_136913563.1 1724424..1726640(+) (comA) [Pseudomonas putida strain 1290]
MRTGMFALALGLLALGFLPALPSVGWLWLMLLGGIVCACTRLWPLGCFLLGLCWACWSAQQALDDRLAPVLDGRTVWLEG
KVVGLPNRSAQGVRFELEQPRSRRARLPERIQVSWFEGPAVQAGERWRLAVTLQRPAGLSNPHGPDRQAQLLARGIGATG
TVKAGEVVDAAAPGWRHALRERLLAVDAHGREAVLVALVLGDGSGLARQDWQVLQATGTVHLLVISGQHIGLVAGLVYAL
VVGLVRCGLWPRRWPWLPWACGLAMSAALAYGWLAGAGVPVQRACLMLAVVLVWRLRFRHLGAFFPWLLALVLVLLVEPL
AALLPGFWLSFAAVAVLIYCFSARLGGWRPWQAWTRAQWVIAIGLLPVLLATGLPVSLSAPLANLLAVPWISLAVLPLAL
LGTALLPLAGIGEALLWLAGGSLDLLLRGLTLLAQWRPAWEPPALPLWAWALVCLGALLLLLPRGVPLRGLGGVMLLALW
VPRDEVPPGHVEVWQLDVGQGLAVLLRTRNHTLLYDAGPAFGDNDLGERVVLPTLRKLGIRHLDVMLISHAHADHSGGAP
AIHRGLPVARVLAGEPEALAQALRAQACSNDDSWEWDGVRFSSWRWADGQSSNDRSCVLLVEAQGERLLLAGDMEAGAER
AWLAATDEPRIDWLQSPHHGSRSSSTEAFVRATAPRGVLISRGRHNGFGHPHAQVIERYRRHGVAVHDTAVDGALRLMLG
REGEVEGVRGQRRWWRVE

Nucleotide


Download         Length: 2217 bp        

>NTDB_id=358219 E6B08_RS08230 WP_136913563.1 1724424..1726640(+) (comA) [Pseudomonas putida strain 1290]
ATGCGCACAGGGATGTTTGCGCTCGCCCTCGGGCTGCTTGCCCTGGGTTTTCTTCCGGCATTGCCATCGGTCGGCTGGCT
GTGGCTGATGCTGCTGGGCGGTATCGTCTGCGCCTGCACCCGGTTGTGGCCGTTGGGCTGCTTCCTGCTCGGGCTGTGCT
GGGCCTGCTGGTCGGCGCAGCAGGCATTGGACGATCGCCTGGCACCGGTGCTCGACGGCCGCACGGTGTGGCTGGAGGGC
AAGGTCGTCGGCTTGCCCAACCGTTCCGCGCAAGGCGTGCGCTTCGAGCTGGAGCAGCCGCGCTCGCGCCGTGCTCGATT
GCCCGAGCGTATACAAGTGAGTTGGTTTGAGGGCCCAGCCGTGCAGGCAGGGGAGCGTTGGCGGCTGGCCGTCACCCTGC
AGCGCCCGGCAGGGTTGTCCAATCCGCATGGCCCGGATCGCCAGGCGCAATTGCTGGCGCGAGGGATCGGCGCTACCGGC
ACGGTCAAGGCCGGCGAGGTGGTGGATGCCGCTGCGCCAGGTTGGCGGCATGCCTTGCGCGAGCGCCTGCTGGCTGTCGA
CGCCCATGGCCGGGAAGCCGTATTGGTGGCACTGGTGCTGGGCGATGGCTCGGGGTTGGCCCGCCAGGACTGGCAGGTGT
TGCAGGCCACCGGCACGGTGCATCTGCTGGTTATTTCCGGGCAGCACATTGGCCTGGTTGCCGGCTTGGTGTATGCCCTG
GTCGTGGGGCTGGTGCGCTGCGGTTTGTGGCCTCGGCGTTGGCCGTGGTTGCCTTGGGCTTGTGGCCTGGCCATGTCAGC
CGCGCTGGCTTATGGCTGGCTTGCCGGCGCGGGCGTACCGGTGCAGCGCGCTTGCCTGATGCTGGCCGTGGTACTGGTCT
GGCGCTTGCGCTTTCGCCATCTGGGGGCTTTCTTCCCCTGGCTGCTTGCCTTGGTCCTGGTCCTGCTGGTCGAGCCTTTG
GCGGCTTTGCTGCCGGGCTTCTGGCTGTCGTTCGCCGCGGTCGCGGTGCTGATCTACTGCTTCAGCGCCCGCCTGGGTGG
TTGGCGTCCCTGGCAGGCCTGGACGCGGGCGCAATGGGTGATCGCCATCGGCCTGCTGCCGGTGTTGCTGGCCACCGGGT
TGCCGGTCAGTCTCAGCGCGCCGTTGGCCAACCTGCTGGCGGTACCGTGGATCAGCCTGGCGGTATTGCCCCTGGCGTTA
TTGGGCACTGCGCTGCTCCCGCTTGCAGGTATCGGCGAGGCGCTGTTGTGGCTGGCGGGCGGCTCGCTGGACCTCTTGTT
GCGTGGGCTGACCCTGCTGGCGCAATGGCGGCCGGCGTGGGAGCCGCCGGCATTGCCACTCTGGGCTTGGGCGTTGGTTT
GCCTGGGCGCGCTGCTGCTGTTGCTGCCGCGTGGCGTGCCGCTGCGGGGCTTGGGCGGGGTCATGCTGCTGGCCCTTTGG
GTGCCCAGGGACGAGGTACCGCCAGGGCATGTGGAAGTCTGGCAGCTGGATGTCGGCCAGGGGCTGGCGGTACTGCTGCG
TACCCGCAACCACACCTTGCTCTACGACGCAGGCCCGGCGTTCGGCGACAACGACCTGGGCGAGCGGGTGGTGCTACCGA
CTTTGCGCAAGCTGGGGATACGGCATCTGGATGTGATGCTGATCAGCCATGCCCATGCCGACCATTCGGGCGGTGCGCCC
GCCATCCATCGGGGCTTGCCGGTCGCACGGGTGCTGGCGGGCGAGCCCGAGGCGCTGGCGCAGGCGTTGCGGGCACAGGC
ATGCAGCAATGACGACAGCTGGGAGTGGGATGGGGTGCGCTTTTCGTCCTGGCGCTGGGCGGATGGGCAAAGCAGCAACG
ATCGTTCCTGCGTGCTGCTGGTCGAGGCGCAGGGCGAGCGCTTGCTGTTGGCCGGCGACATGGAGGCGGGCGCCGAACGG
GCCTGGCTGGCGGCCACCGACGAGCCGCGCATCGATTGGCTGCAATCGCCACATCATGGCAGTCGCAGTTCTTCGACCGA
AGCGTTCGTTCGCGCCACGGCGCCGCGTGGGGTGCTGATTTCACGGGGGCGTCATAACGGATTTGGGCATCCGCATGCGC
AGGTCATCGAGCGTTATCGGCGCCATGGGGTGGCGGTGCACGACACGGCAGTGGATGGGGCATTGCGGCTGATGCTGGGG
CGGGAGGGGGAGGTTGAGGGTGTGCGTGGGCAGCGGCGGTGGTGGCGGGTTGAATGA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(20-167)

Competence protein (Competence)

(198-464)

Metallo-beta-lactamase superfamily (Lactamase_B)

(497-677)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

59.053

97.29

0.575
  comA Ralstonia pseudosolanacearum GMI1000

36.387

100

0.388

Multiple sequence alignment