Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   E6B08_RS08235 Genome accession   NZ_CP039371
Coordinates   1727066..1727701 (+) Length   211 a.a.
NCBI ID   WP_136913564.1    Uniprot ID   A0A4D6X5N2
Organism   Pseudomonas putida strain 1290     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1722066..1732701
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E6B08_RS08220 (E6B08_08220) - 1722985..1723764 (+) 780 WP_136913561.1 ABC transporter permease -
  E6B08_RS08225 (E6B08_08225) - 1723774..1724280 (-) 507 Protein_1566 DUF2062 domain-containing protein -
  E6B08_RS08230 (E6B08_08230) comA 1724424..1726640 (+) 2217 WP_136913563.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  E6B08_RS08235 (E6B08_08235) exbB 1727066..1727701 (+) 636 WP_136913564.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  E6B08_RS08240 (E6B08_08240) - 1727698..1728132 (+) 435 WP_136913565.1 ExbD/TolR family protein -
  E6B08_RS08245 (E6B08_08245) lpxK 1728132..1729154 (+) 1023 WP_136913566.1 tetraacyldisaccharide 4'-kinase -
  E6B08_RS08250 (E6B08_08250) - 1729198..1729383 (+) 186 WP_003247142.1 Trm112 family protein -
  E6B08_RS08255 (E6B08_08255) kdsB 1729380..1730144 (+) 765 WP_136913567.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  E6B08_RS08260 (E6B08_08260) - 1730144..1730608 (+) 465 WP_136913568.1 low molecular weight protein-tyrosine-phosphatase -
  E6B08_RS08265 (E6B08_08265) murB 1730605..1731624 (+) 1020 WP_136913569.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22803.06 Da        Isoelectric Point: 7.3616

>NTDB_id=358220 E6B08_RS08235 WP_136913564.1 1727066..1727701(+) (exbB) [Pseudomonas putida strain 1290]
MWELVKSGGWMMLPIILSSIAAMAIVAERLWTLRASRVSPPHLLGQVWMWIKDKQLTSDKLKALRADSPLGEILAAGLAN
SRHGREIMKECIEEAASRVIHELERYISTLGTIAAMAPLLGLLGTVLGMIDIFSAFMGSQMTANAAVLAGGISKALVTTA
AGLMVGIPAVFFHRFLLRRIDELVVGMEQEAIKLVEVLQGDREVEVAGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=358220 E6B08_RS08235 WP_136913564.1 1727066..1727701(+) (exbB) [Pseudomonas putida strain 1290]
GTGTGGGAATTGGTCAAGTCCGGTGGTTGGATGATGCTGCCGATCATTCTGAGTTCCATCGCTGCCATGGCTATCGTCGC
CGAGCGCCTGTGGACCCTGCGCGCCAGTCGCGTCTCGCCGCCGCACCTGCTGGGCCAGGTGTGGATGTGGATCAAGGACA
AGCAACTCACCAGTGACAAGCTCAAGGCTCTGCGCGCCGACTCGCCGCTGGGCGAGATCCTCGCGGCGGGCCTGGCCAAC
TCGCGCCATGGCCGAGAGATCATGAAGGAATGCATCGAGGAAGCCGCCTCGCGCGTCATCCACGAACTCGAACGCTACAT
CAGCACCCTCGGCACCATCGCCGCCATGGCCCCACTGCTGGGCTTGCTGGGCACCGTGCTGGGCATGATCGACATTTTCA
GTGCCTTCATGGGCTCGCAGATGACCGCCAACGCCGCCGTGCTCGCCGGTGGTATCTCCAAGGCCCTGGTCACCACTGCG
GCCGGCCTGATGGTCGGTATTCCGGCGGTGTTCTTCCACCGCTTCCTGCTGCGTCGCATCGATGAGCTGGTGGTGGGTAT
GGAACAGGAGGCGATCAAGCTGGTCGAGGTGCTGCAGGGCGACCGTGAAGTCGAAGTGGCCGGAGGCAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4D6X5N2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

81.991

100

0.82

Multiple sequence alignment