Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   E6B08_RS02955 Genome accession   NZ_CP039371
Coordinates   611037..611585 (+) Length   182 a.a.
NCBI ID   WP_136912677.1    Uniprot ID   A0A4D6X427
Organism   Pseudomonas putida strain 1290     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 606037..616585
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E6B08_RS02940 (E6B08_02940) bfr 606133..606597 (+) 465 WP_133330047.1 bacterioferritin -
  E6B08_RS02945 (E6B08_02945) uvrA 606669..609503 (-) 2835 WP_192938611.1 excinuclease ABC subunit UvrA -
  E6B08_RS02950 (E6B08_02950) - 609633..611027 (+) 1395 WP_136912676.1 MFS transporter -
  E6B08_RS02955 (E6B08_02955) ssb 611037..611585 (+) 549 WP_136912677.1 single-stranded DNA-binding protein Machinery gene
  E6B08_RS02960 (E6B08_02960) - 611809..612291 (+) 483 WP_136912678.1 hypothetical protein -
  E6B08_RS02965 (E6B08_02965) - 612340..612612 (-) 273 WP_136912679.1 DUF3077 domain-containing protein -
  E6B08_RS02970 (E6B08_02970) - 612617..612892 (-) 276 WP_136912680.1 hypothetical protein -

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 20204.28 Da        Isoelectric Point: 5.9312

>NTDB_id=358217 E6B08_RS02955 WP_136912677.1 611037..611585(+) (ssb) [Pseudomonas putida strain 1290]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQSGQKVERTEWHRVSLFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIIVDMGGTMQLLGGRPQGQQQGGDPYNQGGGNNYNQGGGQQQYNQAPPRQQAQRPQQQQRP
APQQPAPQPAADFDSFDDDIPF

Nucleotide


Download         Length: 549 bp        

>NTDB_id=358217 E6B08_RS02955 WP_136912677.1 611037..611585(+) (ssb) [Pseudomonas putida strain 1290]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTCGGTACCTGTGGCCAGGATCCCGAAGTCCGCTACCTGCCCAACGGTAA
CGCCGTGACCAACCTGAGCCTGGCCACCAGCGAGCAGTGGACCGACAAGCAGTCCGGCCAGAAGGTCGAGCGTACCGAGT
GGCACCGTGTGTCGCTGTTCGGCAAGGTTGCCGAGATCGCCGGCGAGTACCTGCGCAAGGGTTCGCAGGTGTACATCGAG
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGCATCAAGCGCTACACCACCGAAATCATCGTCGACATGGGCGGCAC
CATGCAGTTGCTCGGCGGTCGTCCGCAAGGCCAGCAGCAGGGCGGCGACCCATACAACCAGGGTGGTGGCAACAACTACA
ACCAAGGTGGTGGCCAGCAGCAGTACAACCAGGCTCCGCCACGCCAGCAGGCCCAGCGCCCGCAGCAACAGCAGCGCCCG
GCGCCACAGCAGCCTGCTCCGCAGCCGGCGGCTGACTTCGATAGCTTCGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4D6X427

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

57.065

100

0.577
  ssb Glaesserella parasuis strain SC1401

50.794

100

0.527
  ssb Neisseria meningitidis MC58

46.369

98.352

0.456
  ssb Neisseria gonorrhoeae MS11

46.369

98.352

0.456

Multiple sequence alignment