Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   GR339_RS08190 Genome accession   NZ_CP047212
Coordinates   1598296..1599801 (-) Length   501 a.a.
NCBI ID   WP_002778536.1    Uniprot ID   A0ABP2NPV3
Organism   Campylobacter coli strain JZ_1_79     
Function   interact with DprA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1593296..1604801
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GR339_RS08160 (GR339_08085) - 1593546..1594286 (-) 741 WP_250429544.1 TerC family protein -
  GR339_RS08165 (GR339_08090) - 1594427..1595143 (+) 717 WP_002778541.1 ankyrin repeat domain-containing protein -
  GR339_RS09220 (GR339_08095) - 1595310..1595538 (+) 229 Protein_1582 hypothetical protein -
  GR339_RS08175 (GR339_08100) purN 1595676..1596251 (-) 576 WP_002778539.1 phosphoribosylglycinamide formyltransferase -
  GR339_RS08180 (GR339_08105) - 1596242..1597612 (-) 1371 WP_002783577.1 bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase -
  GR339_RS08185 (GR339_08110) - 1597596..1598294 (-) 699 WP_250403290.1 NYN domain-containing protein -
  GR339_RS08190 (GR339_08115) comM 1598296..1599801 (-) 1506 WP_002778536.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  GR339_RS08195 (GR339_08120) def 1599798..1600325 (-) 528 WP_002778535.1 peptide deformylase -
  GR339_RS08200 (GR339_08125) clpP 1600353..1600937 (-) 585 WP_002783575.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP -
  GR339_RS08205 (GR339_08130) tig 1600937..1602262 (-) 1326 WP_250404234.1 trigger factor -
  GR339_RS08210 (GR339_08135) folE 1602383..1602955 (+) 573 WP_002778530.1 GTP cyclohydrolase I FolE -
  GR339_RS08215 (GR339_08140) fliI 1602955..1604340 (+) 1386 WP_072232192.1 flagellar protein export ATPase FliI -

Sequence

Protein


Download         Length: 501 a.a.        Molecular weight: 56608.64 Da        Isoelectric Point: 8.7459

>NTDB_id=358043 GR339_RS08190 WP_002778536.1 1598296..1599801(-) (comM) [Campylobacter coli strain JZ_1_79]
MKKLKCVSFDENLDIIDVESTFTRGLPNLSIVGLANIAIKESIERIKATLLTCNFSFPAKKITINLSPSGIPKKGSHFDL
VIATLILLQNEDFDDFFVVGELGLDGSIKSTNELFSLLLFLSTKVKSAKVVVPKNIALKASMIPNLEIYGLEHLNEVIEF
FKEKNYEKFKFTQSHPLFANPLIIENEIFIKNHHFELDFKDIKGQEKAKRACLIAALGMHNILFEGSPGSGKSMCAKRLV
EIMPPQSLNEVLMQNAYMSLNSKDCEFTQKRALRHPHHTSTRASIFGGGAKNAKIGEIALANGGVLFFDEFPHFNKQIIE
SLREPLEDHKIHISRVNSKTTYETKFSFVAAQNPCPCGNLFSKNLSCVCSENEIKRYKNHISAPIMDRIDLYVAMDEISK
DDKSSINSKEMSERILKAFIFGKKRGQKEFNGKLNDTELQKFCILEKDAKDTLDLAISRYNLSQRALNKILKVSRSIADF
EEKELLSKNHILEALSFRMRS

Nucleotide


Download         Length: 1506 bp        

>NTDB_id=358043 GR339_RS08190 WP_002778536.1 1598296..1599801(-) (comM) [Campylobacter coli strain JZ_1_79]
ATGAAAAAATTAAAATGTGTAAGCTTTGATGAGAATTTAGATATCATCGATGTAGAGTCTACATTTACAAGAGGCTTACC
TAATTTAAGCATAGTCGGACTTGCAAATATTGCAATTAAAGAAAGTATCGAGCGTATCAAAGCCACACTTTTAACTTGCA
ATTTTTCATTTCCTGCTAAAAAAATCACCATCAATCTTAGCCCTTCAGGAATTCCAAAAAAAGGTTCTCATTTTGATTTA
GTTATCGCTACGCTTATATTGTTGCAAAATGAAGACTTTGATGATTTTTTTGTGGTAGGCGAGCTTGGTCTTGATGGAAG
TATCAAAAGCACCAATGAGCTTTTTTCTTTACTTTTATTTTTATCCACAAAGGTAAAAAGTGCAAAAGTTGTAGTCCCAA
AAAATATAGCTCTAAAAGCTTCTATGATACCCAATCTAGAAATTTATGGACTTGAGCATTTAAATGAAGTGATTGAATTT
TTTAAAGAAAAAAACTATGAGAAATTCAAATTCACCCAAAGCCATCCTTTATTTGCAAATCCTTTGATTATAGAAAATGA
AATTTTTATTAAAAATCATCATTTTGAACTTGATTTTAAAGATATCAAAGGACAAGAAAAAGCTAAAAGAGCTTGTTTGA
TAGCAGCACTAGGTATGCACAATATACTTTTTGAAGGAAGTCCAGGAAGTGGCAAAAGTATGTGTGCAAAACGCCTTGTT
GAAATCATGCCTCCACAAAGTTTAAATGAGGTTTTAATGCAAAATGCTTATATGTCTTTAAATTCTAAAGATTGCGAATT
TACGCAAAAAAGAGCCTTAAGACACCCTCATCATACCTCTACAAGAGCTAGTATTTTTGGTGGTGGAGCAAAAAATGCGA
AGATAGGTGAAATCGCTCTAGCTAATGGTGGAGTTTTATTTTTTGATGAATTTCCTCATTTTAACAAACAGATTATCGAA
AGTCTAAGAGAACCTCTAGAAGATCATAAAATTCATATTTCAAGAGTCAATTCAAAAACCACTTATGAAACCAAATTCAG
TTTTGTTGCCGCTCAAAATCCTTGTCCTTGTGGAAATTTATTTTCTAAAAATCTGTCTTGCGTTTGTAGTGAAAATGAGA
TTAAAAGGTATAAAAATCACATTTCAGCCCCTATTATGGATAGAATTGATCTTTATGTAGCTATGGATGAGATCAGCAAA
GATGATAAGTCAAGTATAAATTCAAAAGAAATGAGTGAAAGAATTTTAAAGGCTTTTATCTTTGGCAAAAAACGCGGCCA
AAAAGAATTTAATGGCAAATTAAACGATACAGAATTGCAAAAATTTTGTATTTTAGAAAAAGATGCCAAGGATACTTTGG
ATTTAGCCATTTCGCGTTATAATCTTTCACAAAGAGCTTTAAATAAAATTTTAAAAGTTTCAAGATCTATTGCAGATTTT
GAAGAAAAAGAACTTCTTAGTAAAAATCATATTTTAGAAGCTTTGAGTTTTAGGATGAGGAGTTAA

Domains

Predicted by InterProScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(198-400)

Subunit ChlI of Mg-chelatase (ChlI)

(18-135)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(407-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Helicobacter pylori 26695

46.293

99.601

0.461

Multiple sequence alignment