Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   E4T61_RS16905 Genome accession   NZ_CP039297
Coordinates   3413668..3414357 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus velezensis isolate UFLA258     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3408668..3419357
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E4T61_RS16870 (E4T61_16870) - 3408865..3409347 (-) 483 WP_003151394.1 flagellar protein FlgN -
  E4T61_RS16875 (E4T61_16875) flgM 3409362..3409628 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  E4T61_RS16880 (E4T61_16880) - 3409698..3410117 (-) 420 WP_012118571.1 TIGR03826 family flagellar region protein -
  E4T61_RS16885 (E4T61_16885) comFC 3410191..3410880 (-) 690 WP_219152091.1 phosphoribosyltransferase family protein Machinery gene
  E4T61_RS16890 (E4T61_16890) - 3410886..3411170 (-) 285 WP_007407481.1 competence protein ComFB -
  E4T61_RS16895 (E4T61_16895) comFA 3411228..3412613 (-) 1386 WP_136396658.1 DEAD/DEAH box helicase Machinery gene
  E4T61_RS16900 (E4T61_16900) - 3412722..3413570 (-) 849 WP_136396659.1 DegV family protein -
  E4T61_RS16905 (E4T61_16905) degU 3413668..3414357 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  E4T61_RS16910 (E4T61_16910) degS 3414434..3415597 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  E4T61_RS16915 (E4T61_16915) - 3415820..3416467 (+) 648 WP_136396660.1 YigZ family protein -
  E4T61_RS16920 (E4T61_16920) - 3416472..3417692 (+) 1221 WP_012118574.1 LCP family protein -
  E4T61_RS16925 (E4T61_16925) - 3417792..3418868 (-) 1077 WP_003151382.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=358043 E4T61_RS16905 WP_003219701.1 3413668..3414357(-) (degU) [Bacillus velezensis isolate UFLA258]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=358043 E4T61_RS16905 WP_003219701.1 3413668..3414357(-) (degU) [Bacillus velezensis isolate UFLA258]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTATCATCCCGATGTTGTCA
TAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGCGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTACCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAATCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTGGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment