Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   E4T61_RS16895 Genome accession   NZ_CP039297
Coordinates   3411228..3412613 (-) Length   461 a.a.
NCBI ID   WP_136396658.1    Uniprot ID   -
Organism   Bacillus velezensis isolate UFLA258     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3406228..3417613
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E4T61_RS16860 (E4T61_16860) flgL 3406403..3407320 (-) 918 WP_007407477.1 flagellar hook-associated protein FlgL -
  E4T61_RS16865 (E4T61_16865) flgK 3407332..3408849 (-) 1518 WP_007407478.1 flagellar hook-associated protein FlgK -
  E4T61_RS16870 (E4T61_16870) - 3408865..3409347 (-) 483 WP_003151394.1 flagellar protein FlgN -
  E4T61_RS16875 (E4T61_16875) flgM 3409362..3409628 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  E4T61_RS16880 (E4T61_16880) - 3409698..3410117 (-) 420 WP_012118571.1 TIGR03826 family flagellar region protein -
  E4T61_RS16885 (E4T61_16885) comFC 3410191..3410880 (-) 690 WP_219152091.1 phosphoribosyltransferase family protein Machinery gene
  E4T61_RS16890 (E4T61_16890) - 3410886..3411170 (-) 285 WP_007407481.1 competence protein ComFB -
  E4T61_RS16895 (E4T61_16895) comFA 3411228..3412613 (-) 1386 WP_136396658.1 DEAD/DEAH box helicase Machinery gene
  E4T61_RS16900 (E4T61_16900) - 3412722..3413570 (-) 849 WP_136396659.1 DegV family protein -
  E4T61_RS16905 (E4T61_16905) degU 3413668..3414357 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  E4T61_RS16910 (E4T61_16910) degS 3414434..3415597 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  E4T61_RS16915 (E4T61_16915) - 3415820..3416467 (+) 648 WP_136396660.1 YigZ family protein -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 52614.93 Da        Isoelectric Point: 10.2458

>NTDB_id=358042 E4T61_RS16895 WP_136396658.1 3411228..3412613(-) (comFA) [Bacillus velezensis isolate UFLA258]
MSEGASEFSEVRDFFYGRHLLRSDIPFSDQRIKRFTEKEYITAEPSIIRRKNRYVCQRCGQSDQASFAAFWAPSAKRQIT
YCRACVVMGRADELTSLYSWNQSHENSWEPVKLSWEGTLTDGQKRAAAALTDAIKERQELLVWAVCGSGKTEMLFPGIEF
ALNHGLRVCVATPRTDVVLELLPRLKKAFEKVEVSALYGGSEDKGRLTPLMISTAHQLMRYRDIFDVMIIDEVDAFPFSA
DETLRFAVDKARKKNSALVYVTATPSDTLKKKAEAGLLKSVRIPARYHRKPLPEPRFLWCGNWKKKLQKGKLPRSVTDWV
RQKLQSQLPVFLFVPSVHVLKKTTDYFQKLNVRAEGVHAEDTFRKDKVKRFRDGRLDLLVTTTILERGVTVPKVQTCVLG
AEAPIFTESALVQIAGRTGRHYKYFSGDVVMFHFGITNGMKKAKKHIEHMNKLAQKSKLLD

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=358042 E4T61_RS16895 WP_136396658.1 3411228..3412613(-) (comFA) [Bacillus velezensis isolate UFLA258]
ATGTCCGAAGGTGCTTCAGAATTTTCAGAGGTGCGGGATTTCTTTTACGGCCGGCATTTATTGAGATCTGATATACCGTT
TTCAGACCAGCGCATTAAGCGTTTTACAGAAAAAGAATATATAACGGCCGAGCCGTCAATCATCCGCCGGAAAAATCGTT
ACGTCTGCCAACGATGCGGTCAGTCTGATCAAGCCAGCTTTGCGGCATTTTGGGCGCCCTCTGCCAAAAGGCAGATTACC
TATTGCCGTGCCTGTGTCGTGATGGGAAGGGCTGATGAACTGACATCATTATATTCTTGGAATCAATCCCATGAAAACAG
CTGGGAGCCTGTAAAGCTTTCTTGGGAAGGAACACTGACAGACGGACAGAAGCGGGCGGCCGCCGCGCTTACAGATGCGA
TAAAAGAGAGACAAGAGCTGTTAGTATGGGCGGTTTGCGGATCGGGGAAAACAGAGATGCTGTTTCCGGGTATCGAGTTT
GCGCTGAATCACGGTTTGCGCGTCTGTGTCGCGACTCCGCGTACAGATGTCGTACTTGAACTGCTGCCGAGACTGAAAAA
AGCATTTGAGAAAGTCGAAGTTTCTGCTTTGTACGGCGGCAGCGAGGACAAAGGCCGTCTGACTCCGTTAATGATTTCAA
CCGCTCACCAGCTGATGCGCTACCGAGACATTTTTGATGTCATGATAATAGATGAAGTAGATGCGTTTCCTTTTTCAGCC
GATGAGACATTAAGATTCGCTGTTGATAAAGCGAGGAAGAAAAACAGCGCCCTTGTTTATGTAACGGCAACTCCTTCAGA
CACATTAAAAAAGAAGGCTGAAGCCGGTTTGCTGAAAAGCGTCCGCATACCGGCCAGATATCATCGGAAACCCCTCCCGG
AGCCGCGTTTTTTGTGGTGCGGCAATTGGAAGAAGAAGCTTCAGAAAGGAAAACTGCCGCGCTCTGTAACCGATTGGGTC
CGCCAAAAACTTCAATCACAGCTGCCGGTTTTCTTATTCGTTCCGTCTGTACATGTATTGAAAAAGACAACGGATTATTT
TCAGAAATTAAATGTAAGGGCAGAAGGCGTTCATGCGGAAGACACATTCAGAAAGGATAAAGTGAAACGGTTCAGAGACG
GCCGGCTTGACCTGCTGGTAACGACTACGATTTTAGAAAGAGGGGTTACCGTGCCCAAAGTTCAGACATGTGTCCTCGGC
GCAGAAGCACCTATCTTTACTGAGAGCGCGCTCGTACAGATCGCGGGCAGAACGGGAAGGCATTATAAATATTTCAGCGG
TGATGTCGTCATGTTTCATTTCGGAATTACAAACGGAATGAAAAAAGCAAAAAAACATATAGAACATATGAACAAATTGG
CACAAAAAAGTAAATTGTTGGACTAG

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(328-421)

Type III restriction enzyme, res subunit (ResIII)

(118-266)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

62.391

99.783

0.623

Multiple sequence alignment