Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   E4T61_RS16885 Genome accession   NZ_CP039297
Coordinates   3410191..3410880 (-) Length   229 a.a.
NCBI ID   WP_219152091.1    Uniprot ID   -
Organism   Bacillus velezensis isolate UFLA258     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3405191..3415880
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E4T61_RS16850 (E4T61_16850) fliW 3405282..3405713 (-) 432 WP_007407475.1 flagellar assembly protein FliW -
  E4T61_RS16855 (E4T61_16855) - 3405743..3406312 (-) 570 WP_032867077.1 DUF6470 family protein -
  E4T61_RS16860 (E4T61_16860) flgL 3406403..3407320 (-) 918 WP_007407477.1 flagellar hook-associated protein FlgL -
  E4T61_RS16865 (E4T61_16865) flgK 3407332..3408849 (-) 1518 WP_007407478.1 flagellar hook-associated protein FlgK -
  E4T61_RS16870 (E4T61_16870) - 3408865..3409347 (-) 483 WP_003151394.1 flagellar protein FlgN -
  E4T61_RS16875 (E4T61_16875) flgM 3409362..3409628 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  E4T61_RS16880 (E4T61_16880) - 3409698..3410117 (-) 420 WP_012118571.1 TIGR03826 family flagellar region protein -
  E4T61_RS16885 (E4T61_16885) comFC 3410191..3410880 (-) 690 WP_219152091.1 phosphoribosyltransferase family protein Machinery gene
  E4T61_RS16890 (E4T61_16890) - 3410886..3411170 (-) 285 WP_007407481.1 competence protein ComFB -
  E4T61_RS16895 (E4T61_16895) comFA 3411228..3412613 (-) 1386 WP_136396658.1 DEAD/DEAH box helicase Machinery gene
  E4T61_RS16900 (E4T61_16900) - 3412722..3413570 (-) 849 WP_136396659.1 DegV family protein -
  E4T61_RS16905 (E4T61_16905) degU 3413668..3414357 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  E4T61_RS16910 (E4T61_16910) degS 3414434..3415597 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25333.92 Da        Isoelectric Point: 8.2927

>NTDB_id=358041 E4T61_RS16885 WP_219152091.1 3410191..3410880(-) (comFC) [Bacillus velezensis isolate UFLA258]
MNCLLCDSPISSSLTWRSLFSLAPEQEMCNICSSQFEKIEGPVCSICGRPQESNEKCADCAARESKTEKRFLLRQNRSVY
LYNDAMKDSLARFKFRGDAKIIQAFERDFSAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSEMLASLLGRPVISPLIRL
NNEKQSKKSKTDRLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=358041 E4T61_RS16885 WP_219152091.1 3410191..3410880(-) (comFC) [Bacillus velezensis isolate UFLA258]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGTTCATTGACTTGGAGATCTCTGTTTTCTCTGGCACCCGAGCAAGA
GATGTGCAACATATGCAGCAGCCAATTCGAAAAAATTGAAGGCCCCGTATGCAGTATATGCGGGAGGCCTCAGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAAGCGCTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTGTATAATGATGCGATGAAGGACTCATTGGCCCGTTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATTTGAACG
TGACTTTTCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGATTCAATCAATCCGAGATGCTGGCCTCTCTGCTCGGAAGGCCCGTCATTTCCCCCCTCATCCGACTG
AACAACGAAAAACAATCCAAAAAGAGCAAAACAGACAGGCTGTCTGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCCGC
CGAAGGTATGAACGTCATTTTAATAGATGATATTTATACGACGGGCGCCACACTTCACCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGCAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(167-227)

Double zinc ribbon domain (DZR_2)

(2-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

60.352

99.127

0.598

Multiple sequence alignment