Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   E4T61_RS11870 Genome accession   NZ_CP039297
Coordinates   2464638..2464973 (+) Length   111 a.a.
NCBI ID   WP_003153104.1    Uniprot ID   -
Organism   Bacillus velezensis isolate UFLA258     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2459638..2469973
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E4T61_RS11850 (E4T61_11850) gcvT 2460244..2461344 (-) 1101 WP_012117974.1 glycine cleavage system aminomethyltransferase GcvT -
  E4T61_RS11855 (E4T61_11855) - 2461768..2463438 (+) 1671 WP_025284995.1 SNF2-related protein -
  E4T61_RS11860 (E4T61_11860) - 2463460..2464254 (+) 795 WP_136396493.1 YqhG family protein -
  E4T61_RS11865 (E4T61_11865) sinI 2464431..2464604 (+) 174 WP_003153105.1 anti-repressor SinI family protein Regulator
  E4T61_RS11870 (E4T61_11870) sinR 2464638..2464973 (+) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  E4T61_RS11875 (E4T61_11875) - 2465021..2465806 (-) 786 WP_007408329.1 TasA family protein -
  E4T61_RS11880 (E4T61_11880) - 2465871..2466443 (-) 573 WP_136396777.1 signal peptidase I -
  E4T61_RS11885 (E4T61_11885) tapA 2466427..2467098 (-) 672 WP_015240206.1 amyloid fiber anchoring/assembly protein TapA -
  E4T61_RS11890 (E4T61_11890) - 2467357..2467686 (+) 330 WP_012117979.1 DUF3889 domain-containing protein -
  E4T61_RS11895 (E4T61_11895) - 2467726..2467905 (-) 180 WP_003153093.1 YqzE family protein -
  E4T61_RS11900 (E4T61_11900) comGG 2467962..2468339 (-) 378 WP_012117980.1 competence type IV pilus minor pilin ComGG Machinery gene
  E4T61_RS11905 (E4T61_11905) comGF 2468340..2468840 (-) 501 WP_257474763.1 competence type IV pilus minor pilin ComGF -
  E4T61_RS11910 (E4T61_11910) comGE 2468749..2469063 (-) 315 WP_012117982.1 competence type IV pilus minor pilin ComGE -
  E4T61_RS11915 (E4T61_11915) comGD 2469047..2469484 (-) 438 WP_052827646.1 competence type IV pilus minor pilin ComGD Machinery gene
  E4T61_RS11920 (E4T61_11920) comGC 2469474..2469740 (-) 267 WP_042635730.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12972.64 Da        Isoelectric Point: 7.2023

>NTDB_id=358018 E4T61_RS11870 WP_003153104.1 2464638..2464973(+) (sinR) [Bacillus velezensis isolate UFLA258]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKAQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=358018 E4T61_RS11870 WP_003153104.1 2464638..2464973(+) (sinR) [Bacillus velezensis isolate UFLA258]
TTGATTGGCCAGCGTATTAAACAATACCGAAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATTTACAGACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTACTTGATGAAAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTAGTTCGCGATGCGATGACATCCGGGGTATCAAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAAGC
GCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

99.099

100

0.991

Multiple sequence alignment