Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   E4A35_RS27280 Genome accession   NZ_CP039269
Coordinates   5233749..5234270 (-) Length   173 a.a.
NCBI ID   WP_000981967.1    Uniprot ID   A0A063CSK8
Organism   Bacillus cereus strain MH19     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5228749..5239270
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E4A35_RS27260 rplI 5229959..5230405 (-) 447 WP_000864235.1 50S ribosomal protein L9 -
  E4A35_RS27265 - 5230402..5232375 (-) 1974 WP_001113900.1 DHH family phosphoesterase -
  E4A35_RS27270 - 5232454..5233389 (-) 936 WP_000799149.1 YybS family protein -
  E4A35_RS27275 rpsR 5233470..5233703 (-) 234 WP_000918874.1 30S ribosomal protein S18 -
  E4A35_RS27280 ssbA 5233749..5234270 (-) 522 WP_000981967.1 single-stranded DNA-binding protein Machinery gene
  E4A35_RS27285 rpsF 5234297..5234587 (-) 291 WP_001233779.1 30S ribosomal protein S6 -
  E4A35_RS27290 ychF 5234779..5235879 (-) 1101 WP_000524669.1 redox-regulated ATPase YchF -
  E4A35_RS27295 - 5235995..5236192 (-) 198 WP_000436051.1 DUF951 domain-containing protein -
  E4A35_RS27300 - 5236213..5237094 (-) 882 WP_000382909.1 mechanosensitive ion channel family protein -
  E4A35_RS27305 yyaC 5237354..5237950 (+) 597 WP_070171181.1 spore protease YyaC -
  E4A35_RS27310 spo0J 5237971..5238822 (-) 852 WP_001051842.1 stage 0 sporulation protein Spo0J -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 18823.61 Da        Isoelectric Point: 4.9327

>NTDB_id=357796 E4A35_RS27280 WP_000981967.1 5233749..5234270(-) (ssbA) [Bacillus cereus strain MH19]
MMNRVILVGRLTKDPDLRYTPNGVAVATFTLAVNRAFANQQGEREADFINCVIWRKQAENVANYLKKGSLAGVDGRLQTR
NYEGQDGKRVYVTEVLAESVQFLEPRNGGGEQRGSFNQQPSGAGFGNQSSNPFGQSSNSGNQGNQGNSGFTKNDDPFSNV
GQPIDISDDDLPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=357796 E4A35_RS27280 WP_000981967.1 5233749..5234270(-) (ssbA) [Bacillus cereus strain MH19]
TTGATGAATCGTGTTATCCTCGTTGGTCGTTTAACTAAGGACCCTGACTTACGTTACACGCCCAATGGTGTTGCAGTAGC
TACTTTTACGTTAGCTGTGAATCGCGCATTTGCGAATCAACAAGGTGAGCGTGAAGCTGACTTTATTAATTGTGTAATAT
GGCGTAAACAAGCAGAAAACGTAGCAAATTATTTGAAAAAAGGTAGCTTAGCAGGCGTAGATGGACGTCTTCAAACTCGT
AATTACGAGGGACAAGATGGTAAGCGTGTATATGTAACAGAAGTTCTTGCGGAAAGCGTACAATTTTTAGAGCCGCGTAA
TGGCGGTGGGGAGCAACGTGGTTCATTTAATCAGCAACCATCAGGAGCTGGTTTCGGTAACCAAAGCTCTAACCCATTTG
GTCAATCTAGTAATTCGGGCAACCAAGGTAACCAAGGAAACTCTGGATTTACGAAGAATGACGATCCATTTTCAAATGTA
GGTCAACCGATCGACATTTCCGACGACGATTTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A063CSK8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

72.316

100

0.74
  ssb Latilactobacillus sakei subsp. sakei 23K

58.286

100

0.59
  ssbB Bacillus subtilis subsp. subtilis str. 168

65.094

61.272

0.399
  ssb Glaesserella parasuis strain SC1401

36.264

100

0.382

Multiple sequence alignment