Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   E5678_RS19105 Genome accession   NZ_CP039252
Coordinates   4183673..4184167 (+) Length   164 a.a.
NCBI ID   WP_136180000.1    Uniprot ID   A0A4P7RCA7
Organism   Hydrogenophaga sp. PAMC20947     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4178673..4189167
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E5678_RS19090 (E5678_19080) - 4179449..4180381 (-) 933 WP_168708611.1 DMT family transporter -
  E5678_RS19095 (E5678_19085) - 4180638..4181837 (+) 1200 WP_136180874.1 MFS transporter -
  E5678_RS19100 (E5678_19090) - 4181927..4183549 (-) 1623 WP_136179999.1 chloride channel protein -
  E5678_RS19105 (E5678_19095) ssb 4183673..4184167 (+) 495 WP_136180000.1 single-stranded DNA-binding protein Machinery gene
  E5678_RS19110 (E5678_19100) - 4184499..4185806 (+) 1308 WP_247596834.1 ferric reductase-like transmembrane domain-containing protein -
  E5678_RS19115 (E5678_19105) - 4186247..4186864 (+) 618 WP_136180002.1 class I SAM-dependent methyltransferase -
  E5678_RS19120 (E5678_19110) - 4186868..4188193 (+) 1326 WP_136180003.1 DUF3422 domain-containing protein -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 17533.64 Da        Isoelectric Point: 5.9588

>NTDB_id=357646 E5678_RS19105 WP_136180000.1 4183673..4184167(+) (ssb) [Hydrogenophaga sp. PAMC20947]
MASVNKVILVGNCGRDPEIRYLPSGGAVANVTVATSSRRKDKNSGEMIEDTQWHRVTFFERLAEIVGEYVKKGSPIYIEG
RLRYSTYMDKTTGVEKNSVEIVATEMQLLGGREGRGGGDEGGGSGYSRPAAAPRQAPARPAPAPAPAAARPASGFDDMDD
DIPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=357646 E5678_RS19105 WP_136180000.1 4183673..4184167(+) (ssb) [Hydrogenophaga sp. PAMC20947]
ATGGCCTCAGTCAACAAAGTCATCCTCGTCGGCAATTGCGGCCGCGATCCCGAAATCCGTTACCTGCCCTCCGGTGGCGC
TGTGGCCAACGTGACCGTGGCGACGTCCAGCCGCCGCAAGGACAAAAACAGCGGCGAGATGATCGAAGACACCCAGTGGC
ACCGGGTGACCTTTTTCGAACGGTTGGCCGAAATCGTAGGCGAATACGTCAAAAAGGGCAGCCCGATCTACATTGAGGGT
CGGCTTCGTTACAGCACCTACATGGATAAAACCACGGGGGTGGAAAAGAATTCGGTGGAAATTGTTGCCACCGAAATGCA
GTTGCTTGGCGGCCGTGAAGGCCGGGGCGGTGGTGATGAGGGCGGTGGCAGTGGTTACTCCCGCCCGGCGGCTGCTCCAC
GGCAGGCGCCAGCCCGTCCGGCCCCAGCACCCGCGCCTGCAGCCGCCCGGCCTGCCAGCGGCTTCGACGACATGGACGAC
GACATTCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4P7RCA7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Neisseria gonorrhoeae MS11

48

100

0.512
  ssb Neisseria meningitidis MC58

47.429

100

0.506
  ssb Vibrio cholerae strain A1552

45.251

100

0.494
  ssb Glaesserella parasuis strain SC1401

42.553

100

0.488

Multiple sequence alignment