Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   GR130_RS05620 Genome accession   NZ_CP047146
Coordinates   1334198..1336408 (+) Length   736 a.a.
NCBI ID   WP_159503676.1    Uniprot ID   -
Organism   Streptomyces sp. GS7     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1329198..1341408
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GR130_RS05605 (GR130_05605) - 1330426..1331604 (+) 1179 WP_159503674.1 Gfo/Idh/MocA family oxidoreductase -
  GR130_RS05610 (GR130_05610) - 1331601..1332779 (+) 1179 WP_159503675.1 dihydrodipicolinate synthase family protein -
  GR130_RS05615 (GR130_05615) - 1332887..1333774 (+) 888 WP_159509771.1 sugar phosphate isomerase/epimerase family protein -
  GR130_RS05620 (GR130_05620) recD/recD2/recDB 1334198..1336408 (+) 2211 WP_159503676.1 ATP-dependent RecD-like DNA helicase Machinery gene
  GR130_RS05625 (GR130_05625) - 1336585..1337874 (+) 1290 WP_159503677.1 citrate synthase -
  GR130_RS05630 (GR130_05630) - 1338572..1338856 (-) 285 WP_159503678.1 heavy-metal-associated domain-containing protein -
  GR130_RS05635 (GR130_05635) - 1339114..1339776 (+) 663 WP_159503679.1 DedA family protein -
  GR130_RS05640 (GR130_05640) - 1339806..1340375 (+) 570 WP_159503680.1 GNAT family N-acetyltransferase -
  GR130_RS05645 (GR130_05645) - 1340341..1341297 (-) 957 WP_236572815.1 sulfite exporter TauE/SafE family protein -

Sequence

Protein


Download         Length: 736 a.a.        Molecular weight: 79180.61 Da        Isoelectric Point: 7.0156

>NTDB_id=357646 GR130_RS05620 WP_159503676.1 1334198..1336408(+) (recD/recD2/recDB) [Streptomyces sp. GS7]
MVNAAVVEGVLERITYANEESGYTVARVDTGRGSGDLLTVVGALLGAQPGESLRMEGRWGSHPQYGKQFTVENYTTVLPA
TVQGIRRYLGSGLIKGIGPRIADRITEHFGTDTLDVIESDPGRLIEVPGLGPKRTKLIGAAWEEQKAIKEVMVFLQGVGV
STSIAVRIYKKYGDASISVVRNHPYRLAADVWGIGFLTADRIAQAVGIPHDSPDRVKAGLQYALSQSTDQGHCFLPEEQL
IADAVKLLQVDTGLVIDCLAELAADPEGVVREKVPGAEDGEPVTAVYLVPFHRAEISLAGRLTRLLRTDEDRMPAFRDVV
WDKALAWLARRTGAELAPEQQAAVRLALTSRVAVLTGGPGCGKSFTVRSVVELARAKQAKVVLAAPTGRAAKRLAELTGA
DASTVHRLLELKPGGDAAYDADRPLDADLVVVDEASMLDLLLANKLVKAVPPGAHLLLVGDVDQLPSVGAGEVLRDLLAE
PGPVPAVRLTRIFRQAQQSGVVTNAHRINSGVPPLTTGLKDFFLFAEEDAEAAARLTVDVVARRIPAKFGLDPRRDVQVL
APMHRGPAGAGALNGLLQQAVTPARPDLPERRFGGRVFRVGDKVTQIRNNYEKGRNGVFNGTVGVVTALDADEQRLTVLT
DEDEEVPYDFDELDELAHAYAVTIHRSQGSEYPAVVIPVTTSAWMMLQRNLLYTAVTRAKRLVVLVGSRRALGQAVRTVS
AGRRHTALDHRLAGAM

Nucleotide


Download         Length: 2211 bp        

>NTDB_id=357646 GR130_RS05620 WP_159503676.1 1334198..1336408(+) (recD/recD2/recDB) [Streptomyces sp. GS7]
ATGGTCAACGCAGCCGTGGTGGAAGGGGTCCTGGAGCGGATCACCTACGCCAATGAGGAGAGCGGCTACACGGTCGCGCG
CGTCGATACGGGTCGCGGCTCGGGCGATCTGCTGACCGTCGTCGGCGCCCTGCTGGGTGCGCAGCCGGGCGAGTCGCTCC
GTATGGAGGGCCGTTGGGGCTCCCACCCCCAGTACGGCAAGCAGTTCACGGTCGAGAACTACACCACGGTCCTGCCCGCC
ACCGTCCAGGGCATCCGCCGCTATCTGGGCTCCGGTCTGATCAAGGGCATCGGCCCGCGGATCGCCGACCGCATCACCGA
GCACTTCGGCACGGACACCCTCGACGTGATCGAGTCCGACCCCGGGCGCCTCATCGAGGTGCCGGGCCTGGGCCCCAAGC
GCACGAAGCTGATCGGTGCGGCCTGGGAGGAGCAGAAGGCCATCAAGGAGGTCATGGTCTTCCTCCAGGGCGTCGGGGTG
TCCACGTCCATCGCGGTGCGGATCTACAAGAAGTACGGCGACGCCTCCATCTCCGTGGTGCGGAACCACCCCTACCGCCT
CGCCGCCGACGTCTGGGGCATCGGCTTCCTCACCGCCGACCGGATCGCCCAGGCGGTCGGCATTCCGCACGACAGCCCGG
ACCGGGTCAAGGCGGGCCTCCAGTACGCCCTGTCGCAGTCGACGGACCAGGGCCACTGCTTCCTGCCCGAGGAGCAACTG
ATCGCGGACGCGGTGAAGTTGCTCCAGGTGGACACCGGCCTGGTCATCGACTGTCTCGCCGAGCTGGCCGCGGACCCCGA
GGGCGTGGTCCGGGAGAAGGTGCCGGGCGCGGAGGACGGCGAGCCGGTCACCGCGGTCTATCTGGTGCCGTTCCACCGCG
CCGAGATCTCCCTGGCCGGCCGGCTGACCCGGCTGCTGCGTACGGACGAGGACCGGATGCCCGCGTTCCGCGACGTGGTC
TGGGACAAGGCGCTGGCCTGGCTGGCCCGGCGTACGGGCGCGGAGCTGGCGCCCGAGCAGCAGGCCGCGGTCCGGCTGGC
GCTGACCAGCAGGGTCGCGGTGCTCACGGGCGGGCCCGGCTGCGGCAAGTCGTTCACGGTCCGCTCGGTCGTCGAGCTGG
CCCGCGCCAAGCAGGCCAAGGTGGTGCTGGCGGCGCCCACGGGCCGGGCGGCCAAGCGGCTCGCGGAGCTGACCGGAGCG
GACGCGTCCACCGTCCACCGCCTCCTGGAGCTCAAGCCGGGCGGGGACGCCGCCTACGACGCGGACCGCCCGCTGGATGC
CGATCTGGTGGTGGTCGACGAGGCGTCGATGCTCGATCTGCTGCTGGCCAACAAGCTCGTCAAGGCGGTGCCGCCGGGCG
CCCATCTGCTGCTGGTGGGGGACGTCGACCAGCTGCCGTCGGTCGGCGCCGGGGAGGTGCTGCGGGATCTGCTGGCCGAG
CCGGGCCCTGTGCCGGCGGTCCGGCTGACCAGGATCTTCCGGCAGGCCCAGCAGTCCGGGGTGGTCACCAACGCGCACCG
CATCAACTCCGGGGTGCCGCCGCTGACCACCGGCCTGAAGGACTTCTTCCTGTTCGCCGAGGAGGACGCGGAGGCGGCGG
CCCGGCTGACGGTCGACGTGGTGGCGCGCCGCATCCCGGCGAAGTTCGGCCTGGACCCGCGCCGGGACGTCCAGGTGCTG
GCCCCGATGCACCGCGGCCCGGCCGGTGCGGGGGCGCTCAACGGCCTCCTCCAGCAGGCGGTGACCCCGGCCCGCCCGGA
TCTTCCCGAGCGCCGCTTCGGCGGCCGGGTCTTCCGCGTCGGCGACAAGGTCACCCAGATCCGGAACAACTACGAGAAGG
GCCGCAACGGCGTCTTCAACGGCACGGTGGGGGTGGTCACCGCCCTCGACGCCGACGAGCAGCGGCTGACGGTCCTCACG
GACGAGGACGAGGAGGTTCCGTACGACTTCGACGAGCTCGACGAACTCGCCCATGCCTATGCCGTGACGATCCATCGCTC
CCAGGGGAGCGAGTATCCGGCGGTGGTGATTCCGGTCACCACCAGCGCCTGGATGATGCTCCAGCGCAATCTGCTCTATA
CGGCCGTGACGCGGGCGAAACGTCTGGTGGTCCTGGTCGGCTCCCGGAGGGCCCTGGGACAGGCCGTACGGACCGTATCC
GCCGGTCGGCGGCATACGGCGCTCGATCACCGGCTCGCCGGAGCGATGTGA

Domains

Predicted by InterProScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(658-706)

Helix-hairpin-helix domain (HHH_5)

(94-138)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(573-638)

AAA domain (AAA_30)

(335-514)

Helix-hairpin-helix containing domain (HHH_RecD2)

(144-234)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

34.681

100

0.361

Multiple sequence alignment