Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   E5677_RS01320 Genome accession   NZ_CP039251
Coordinates   307224..308279 (+) Length   351 a.a.
NCBI ID   WP_062845501.1    Uniprot ID   -
Organism   Psychrobacter sp. PAMC27889     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 302224..313279
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E5677_RS01310 (E5677_01310) - 303780..304307 (+) 528 WP_062845503.1 DUF6586 family protein -
  E5677_RS01315 (E5677_01315) - 304394..307030 (-) 2637 WP_062845502.1 penicillin-binding protein 1A -
  E5677_RS01320 (E5677_01320) comM 307224..308279 (+) 1056 WP_062845501.1 type IV pilus assembly protein PilM Machinery gene
  E5677_RS01325 (E5677_01325) - 308279..308950 (+) 672 WP_062845500.1 PilN domain-containing protein -
  E5677_RS01330 (E5677_01330) - 308947..309684 (+) 738 WP_062845499.1 type 4a pilus biogenesis protein PilO -
  E5677_RS01335 (E5677_01335) - 309684..310217 (+) 534 WP_062845498.1 pilus assembly protein PilP -
  E5677_RS01340 (E5677_01340) pilQ 310246..312606 (+) 2361 WP_062845497.1 type IV pilus secretin PilQ -

Sequence

Protein


Download         Length: 351 a.a.        Molecular weight: 38247.47 Da        Isoelectric Point: 4.4763

>NTDB_id=357613 E5677_RS01320 WP_062845501.1 307224..308279(+) (comM) [Psychrobacter sp. PAMC27889]
MRLFTSKSRHLIGVDICATSVKLVDIQRQQGAFHLKSYGIERLPEGVVVDKLLVDTEAVGHIIATVARRCQVGGSNAATA
VSGSAVITKIIDMDLALSDVEREAQIRLDADQYVPYPLEDVNLDFEVLGPSLISDDMVQVLLAASRSENVDQRVDALTFG
GMQTKVMDIESHAIERAFGLMADSLTNFPELVALVDIGHNQTTLYIAKNGEFIYSREQLFGGVQLTEAIQNRYGLSAEEA
AFSKRERTLPDDYYIEVLTPFIENTIQQITRSLQFYFSSSQYSSIDHIVLAGGSSAIAGLAGMAQQRLGVPVSVANPFTN
MTIAPHIDNEQLAIDAPSLMAACGLALRSFD

Nucleotide


Download         Length: 1056 bp        

>NTDB_id=357613 E5677_RS01320 WP_062845501.1 307224..308279(+) (comM) [Psychrobacter sp. PAMC27889]
GTGAGGCTATTTACTTCCAAAAGTCGACATTTGATTGGCGTGGATATTTGTGCCACCTCAGTGAAGTTAGTTGACATACA
GCGTCAACAGGGTGCTTTTCACTTAAAGTCTTATGGTATTGAGAGACTGCCGGAAGGTGTGGTCGTTGATAAACTTTTAG
TAGATACAGAAGCGGTTGGTCATATTATTGCTACTGTCGCTAGGCGTTGTCAAGTTGGGGGTAGCAATGCTGCAACCGCC
GTATCAGGCTCGGCTGTGATTACCAAGATTATTGATATGGATCTCGCGCTAAGCGATGTAGAGCGCGAAGCTCAAATACG
TCTGGATGCCGATCAGTATGTTCCTTATCCATTGGAAGACGTCAATTTGGATTTCGAAGTTTTGGGTCCTTCTTTGATAA
GCGATGACATGGTGCAAGTATTGCTTGCTGCATCTCGTTCAGAAAACGTCGACCAACGCGTTGATGCCCTAACTTTTGGC
GGTATGCAAACCAAGGTGATGGACATCGAGTCTCATGCAATTGAGCGTGCTTTTGGATTAATGGCCGATAGTTTAACAAA
TTTTCCAGAGTTAGTAGCACTGGTAGATATTGGGCACAATCAAACGACCTTATATATCGCCAAAAATGGTGAGTTTATCT
ATAGTCGCGAACAGCTATTTGGTGGTGTTCAACTGACAGAAGCTATACAGAATCGTTATGGTCTGTCGGCTGAGGAAGCG
GCGTTTAGTAAGCGTGAGCGTACTTTGCCTGATGACTACTATATCGAAGTATTGACACCTTTCATTGAAAATACCATTCA
ACAAATCACCCGTTCATTACAATTTTATTTCTCTTCAAGTCAATACAGTAGTATCGATCATATAGTGCTTGCTGGCGGCA
GTAGCGCTATAGCAGGTCTTGCAGGTATGGCTCAACAGAGACTTGGTGTGCCTGTTAGTGTGGCCAATCCATTTACCAAT
ATGACCATTGCACCACATATTGACAATGAGCAATTGGCCATTGATGCACCAAGTTTAATGGCCGCTTGCGGTCTTGCGTT
AAGGAGCTTTGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(13-350)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Acinetobacter nosocomialis M2

50.997

100

0.51
  pilM Acinetobacter baumannii D1279779

50.427

100

0.504
  comM Acinetobacter baylyi ADP1

47.578

100

0.476
  pilM Legionella pneumophila strain ERS1305867

39.943

100

0.402

Multiple sequence alignment