Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   E5675_RS20490 Genome accession   NZ_CP039250
Coordinates   4333222..4333767 (-) Length   181 a.a.
NCBI ID   WP_136176128.1    Uniprot ID   -
Organism   Sphingopyxis sp. PAMC25046     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4328222..4338767
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E5675_RS20460 (E5675_20460) - 4329488..4329949 (+) 462 WP_136176124.1 thioesterase family protein -
  E5675_RS20465 (E5675_20465) - 4330216..4330677 (+) 462 WP_247594706.1 hypothetical protein -
  E5675_RS20470 (E5675_20470) ribD 4330712..4331656 (+) 945 WP_136176599.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -
  E5675_RS20475 (E5675_20475) - 4331664..4332278 (+) 615 WP_136176126.1 riboflavin synthase -
  E5675_RS20480 (E5675_20480) - 4332309..4332743 (+) 435 WP_037556134.1 GFA family protein -
  E5675_RS20485 (E5675_20485) - 4332740..4333207 (-) 468 WP_136176127.1 MmcB family DNA repair protein -
  E5675_RS20490 (E5675_20490) ssb 4333222..4333767 (-) 546 WP_136176128.1 single-stranded DNA-binding protein Machinery gene
  E5675_RS20495 (E5675_20495) - 4333801..4335663 (-) 1863 WP_136176129.1 ferrous iron transporter B -
  E5675_RS20500 (E5675_20500) - 4335660..4335908 (-) 249 WP_136176130.1 FeoA family protein -
  E5675_RS20505 (E5675_20505) - 4335962..4336627 (-) 666 WP_136176131.1 COQ9 family protein -
  E5675_RS20510 (E5675_20510) - 4336822..4337907 (+) 1086 WP_136176132.1 alkene reductase -
  E5675_RS20515 (E5675_20515) - 4337943..4338518 (-) 576 WP_136176133.1 hypothetical protein -

Sequence

Protein


Download         Length: 181 a.a.        Molecular weight: 18564.23 Da        Isoelectric Point: 5.0006

>NTDB_id=357606 E5675_RS20490 WP_136176128.1 4333222..4333767(-) (ssb) [Sphingopyxis sp. PAMC25046]
MAGSVNKVILIGNLGADPEIKSFQNGGKIANIRIATSEQWKDRMSGERKERTEWHNVVVNGDGLVGVVERYLKKGSKVYI
EGSLRTRKWQDRDGNDRYTTEIVIAGMGGTLTMLDGAPGGGGGSRGGGDWGGGSSSGGGWDQGSGGSSGGGGSGGGWNQG
GGSSGGGRPPFDDDLDDDVPF

Nucleotide


Download         Length: 546 bp        

>NTDB_id=357606 E5675_RS20490 WP_136176128.1 4333222..4333767(-) (ssb) [Sphingopyxis sp. PAMC25046]
ATGGCTGGCAGCGTCAACAAGGTAATTCTCATCGGCAATCTCGGCGCCGATCCCGAAATCAAGTCGTTCCAGAACGGCGG
CAAGATCGCCAATATCCGCATCGCGACCAGCGAACAGTGGAAGGACCGCATGTCGGGCGAGCGCAAGGAGCGCACCGAAT
GGCATAATGTCGTCGTCAACGGCGACGGGCTGGTCGGGGTGGTCGAACGGTACCTCAAAAAGGGCTCGAAGGTTTATATC
GAAGGCTCGCTGCGCACCCGCAAATGGCAGGACCGCGACGGTAACGACCGCTACACGACCGAAATCGTGATCGCGGGCAT
GGGCGGCACGCTGACCATGCTCGACGGCGCGCCGGGTGGCGGCGGCGGATCGCGCGGCGGCGGCGACTGGGGCGGCGGTT
CGTCGAGCGGCGGCGGCTGGGACCAGGGCAGCGGCGGCTCCTCCGGCGGCGGCGGCTCGGGCGGCGGCTGGAACCAGGGC
GGCGGCAGCTCGGGCGGCGGACGCCCGCCGTTCGACGACGACCTGGACGACGACGTTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

44.615

100

0.481
  ssb Vibrio cholerae strain A1552

46.667

99.448

0.464
  ssb Neisseria meningitidis MC58

37.158

100

0.376
  ssb Neisseria gonorrhoeae MS11

36.612

100

0.37

Multiple sequence alignment