Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   GLX30_RS10565 Genome accession   NZ_CP047140
Coordinates   2432648..2434273 (-) Length   541 a.a.
NCBI ID   WP_159686496.1    Uniprot ID   -
Organism   Streptomyces sp. Tu 2975     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2427648..2439273
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GLX30_RS10545 (GLX30_10595) - 2428913..2429527 (+) 615 Protein_2147 peptidoglycan DD-metalloendopeptidase family protein -
  GLX30_RS10550 (GLX30_10600) - 2429737..2430294 (-) 558 WP_159694968.1 TetR/AcrR family transcriptional regulator -
  GLX30_RS10555 (GLX30_10605) whiG 2430357..2431193 (-) 837 WP_159686490.1 RNA polymerase sigma factor WhiG -
  GLX30_RS10560 (GLX30_10610) dprA 2431470..2432651 (-) 1182 WP_159686493.1 DNA-processing protein DprA -
  GLX30_RS10565 (GLX30_10615) comM 2432648..2434273 (-) 1626 WP_159686496.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  GLX30_RS10570 (GLX30_10620) - 2434273..2434635 (-) 363 WP_159686499.1 YraN family protein -
  GLX30_RS10575 (GLX30_10625) - 2434752..2435060 (-) 309 WP_005311352.1 DUF2469 domain-containing protein -
  GLX30_RS10580 (GLX30_10630) - 2435090..2435626 (-) 537 WP_159686502.1 NUDIX hydrolase -
  GLX30_RS10585 (GLX30_10635) lepB 2435616..2436362 (-) 747 WP_159686505.1 signal peptidase I -
  GLX30_RS10590 (GLX30_10640) lepB 2436433..2437344 (-) 912 WP_159694969.1 signal peptidase I -
  GLX30_RS10595 (GLX30_10645) lepB 2437286..2438321 (-) 1036 Protein_2157 signal peptidase I -
  GLX30_RS10600 (GLX30_10650) lepB 2438314..2439096 (-) 783 WP_159686511.1 signal peptidase I -

Sequence

Protein


Download         Length: 541 a.a.        Molecular weight: 55470.61 Da        Isoelectric Point: 6.5764

>NTDB_id=357520 GLX30_RS10565 WP_159686496.1 2432648..2434273(-) (comM) [Streptomyces sp. Tu 2975]
MGFARACSVALVGVEGVVVEVQADLEPGVAAFTLVGLPDKSLVESRDRVRAAVVNSGAEWPQKKLTVGLSPASVPKGGSG
FDLAVAVAVLGAAERIDPRQIADLVLIGELGLDGRVRPVRGVLPAVLAAAEAGYEQVVVPEQTAGEASLVPGISVLGVRS
LRQLIAVLADEPVPDDEAVEEGRPDPMLAGLLVPGAGVGTGLATDPAGGPDLADVAGQHTARTALEVAAAGGHHLLLSGP
PGAGKTMLAERLPGVLPPLTRRESLEVTAVHSVAGLLPPGQPLVRTPPYCAPHHSATMQSLVGGGNGLPKPGAVSLAHRG
LLFLDEAPEFSGKALDALRQPLESGHVVVARSGGVVRLPARFLMMLAANPCPCGRHTLHGAGCDCPASAIRRYQARLSGP
LLDRVDLRIEVEPVSRSDLLGQGGRGDSTAVVADRVREARARAAARLDGTPWSVNSEVPGHELRTRWTVSSGALAAAERD
VDRGLLTARGLDRVLRVAWTVADLAGRDRPEASDVALALELRTGIARGVPAGAVAGIGGRP

Nucleotide


Download         Length: 1626 bp        

>NTDB_id=357520 GLX30_RS10565 WP_159686496.1 2432648..2434273(-) (comM) [Streptomyces sp. Tu 2975]
ATGGGATTCGCACGCGCGTGTTCCGTGGCCCTGGTCGGCGTCGAGGGCGTGGTGGTCGAGGTCCAGGCGGATCTGGAGCC
GGGGGTCGCCGCGTTCACGCTCGTCGGGCTCCCGGACAAGAGCCTGGTGGAGAGCCGGGACCGGGTGAGGGCGGCCGTGG
TGAACTCGGGCGCGGAGTGGCCGCAGAAGAAGCTCACCGTGGGGCTCAGCCCGGCGTCGGTGCCCAAGGGCGGGAGCGGC
TTCGACCTCGCCGTGGCCGTCGCCGTGCTCGGCGCCGCCGAGCGGATCGACCCGCGGCAGATCGCCGACCTGGTGCTCAT
CGGGGAGCTGGGGCTCGACGGCCGGGTCAGACCGGTACGAGGAGTGCTCCCCGCAGTGCTCGCCGCGGCCGAGGCCGGGT
ACGAACAGGTCGTCGTGCCCGAGCAGACAGCCGGTGAGGCGTCACTCGTACCGGGGATCTCGGTCCTCGGCGTGCGGAGC
CTGCGACAGCTGATCGCGGTGCTCGCCGACGAGCCGGTGCCGGACGACGAGGCCGTCGAGGAAGGCAGACCCGACCCCAT
GCTGGCCGGACTGCTGGTGCCGGGCGCGGGCGTCGGCACGGGCCTTGCCACGGACCCGGCAGGCGGACCGGACCTGGCCG
ATGTCGCGGGTCAGCACACGGCACGCACGGCTCTCGAGGTCGCGGCGGCAGGCGGACACCATCTGCTGCTCTCCGGCCCG
CCGGGTGCCGGAAAGACCATGCTCGCCGAGCGGCTGCCCGGTGTGCTGCCGCCGCTGACCCGTCGGGAATCCCTCGAAGT
CACGGCGGTGCACTCGGTGGCGGGCCTGCTGCCGCCGGGCCAGCCGCTGGTGCGGACGCCCCCGTACTGCGCACCGCACC
ATTCGGCGACCATGCAGTCGCTCGTCGGTGGCGGGAACGGCCTGCCGAAGCCCGGAGCCGTCTCCCTGGCGCACCGTGGA
CTGCTCTTTCTCGACGAGGCGCCGGAGTTCTCCGGCAAGGCGCTGGACGCCCTGCGGCAACCCTTGGAGTCGGGCCATGT
CGTCGTCGCCAGGAGCGGGGGAGTGGTGCGTCTGCCGGCCCGATTCCTGATGATGCTGGCCGCCAACCCGTGCCCCTGCG
GGCGGCACACCCTGCACGGTGCCGGATGCGACTGCCCCGCGTCGGCGATCCGGCGGTACCAGGCCCGGCTCTCGGGCCCG
CTGCTGGACCGGGTCGACCTGCGCATCGAGGTCGAGCCGGTGAGCCGGTCCGACCTGCTCGGCCAGGGCGGCCGCGGAGA
CTCCACAGCGGTGGTGGCCGACCGGGTGCGCGAGGCCAGGGCCCGTGCGGCGGCCCGGCTGGACGGCACACCGTGGTCCG
TCAACAGCGAGGTCCCCGGCCACGAACTGCGGACCCGCTGGACGGTCTCTTCCGGGGCGCTGGCGGCGGCGGAGCGGGAC
GTGGACCGTGGTCTGCTCACGGCACGCGGTCTGGACCGGGTGCTGAGAGTCGCCTGGACCGTCGCGGACCTCGCCGGCCG
GGACCGGCCGGAGGCGTCCGACGTCGCACTGGCCCTCGAGCTGCGGACCGGGATCGCGAGGGGCGTACCGGCAGGGGCCG
TCGCGGGGATCGGAGGCCGGCCATGA

Domains

Predicted by InterProScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(211-417)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(427-522)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

39.394

97.597

0.384
  comM Vibrio cholerae O1 biovar El Tor strain E7946

40.711

93.53

0.381
  comM Vibrio cholerae strain A1552

40.711

93.53

0.381
  comM Haemophilus influenzae Rd KW20

39.048

97.043

0.379
  comM Acinetobacter baylyi ADP1

38.636

97.597

0.377
  comM Glaesserella parasuis strain SC1401

38.258

97.597

0.373