Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   GQ677_RS04095 Genome accession   NZ_CP047120
Coordinates   793512..794474 (+) Length   320 a.a.
NCBI ID   WP_002995771.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain 1085     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 788512..799474
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GQ677_RS04070 (GQ677_04070) - 788517..789107 (+) 591 WP_111689534.1 serine hydrolase -
  GQ677_RS04075 (GQ677_04075) - 789221..790441 (-) 1221 WP_111689535.1 DUF3114 domain-containing protein -
  GQ677_RS04080 (GQ677_04080) queA 790448..791476 (-) 1029 WP_023078839.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  GQ677_RS04085 (GQ677_04085) nagB 791678..792427 (+) 750 WP_136093448.1 glucosamine-6-phosphate deaminase -
  GQ677_RS04090 (GQ677_04090) - 792501..793217 (+) 717 WP_032462853.1 pseudouridine synthase -
  GQ677_RS04095 (GQ677_04095) coiA 793512..794474 (+) 963 WP_002995771.1 competence protein CoiA Machinery gene
  GQ677_RS04100 (GQ677_04100) pepF 794487..796292 (+) 1806 WP_002995768.1 oligoendopeptidase F Regulator
  GQ677_RS04105 (GQ677_04105) - 796667..797863 (+) 1197 WP_063631969.1 OFA family MFS transporter -
  GQ677_RS04110 (GQ677_04110) - 797929..798636 (+) 708 WP_032465077.1 O-methyltransferase -

Sequence

Protein


Download         Length: 320 a.a.        Molecular weight: 37748.20 Da        Isoelectric Point: 10.2013

>NTDB_id=357312 GQ677_RS04095 WP_002995771.1 793512..794474(+) (coiA) [Streptococcus pyogenes strain 1085]
MTKILTALDGKNQLISLVTQPISTKPPFCCPACKSPVRLRQGTIRRPHFAHVQLAHCQFQAENESEEHLTLKAKLYTSLV
RTEAVCIEKYLPELQQIADLWVNDKLALEIQCSPLPVERLKKRTKAYQEKGYPVRWLLGRKLWLNTHLTALQKQFLYFSS
SLGFHLWELDAAANLLRLKYLIHEDLFGKVSYLTKTISLDHNIMEMFRLPYQQEILYSYQKKMTVNLSKRIQRALLARHP
KWLRRQEKAYLSGYNLLMLTTDAFYPQWRPVQSSSGFCQIKGNLRPYYESFKVYYKKEKDKKVQTLFSPKYYVKMDSNRK

Nucleotide


Download         Length: 963 bp        

>NTDB_id=357312 GQ677_RS04095 WP_002995771.1 793512..794474(+) (coiA) [Streptococcus pyogenes strain 1085]
GTGACAAAAATATTAACCGCTTTAGATGGTAAGAATCAGCTCATTTCGCTAGTAACTCAGCCTATTTCAACGAAACCGCC
TTTTTGTTGCCCAGCTTGCAAATCTCCTGTTCGCTTGCGTCAGGGGACAATTAGACGACCTCATTTTGCCCATGTACAAC
TAGCTCATTGTCAATTCCAAGCAGAAAATGAATCTGAGGAACATTTGACGTTGAAGGCAAAACTTTACACCAGTTTAGTC
CGAACAGAAGCTGTCTGTATTGAAAAATATCTTCCTGAGCTGCAACAGATAGCAGACCTTTGGGTGAATGATAAGTTAGC
CTTAGAAATTCAGTGCAGTCCCTTGCCAGTTGAGCGTCTAAAGAAACGCACCAAAGCCTATCAAGAAAAGGGGTATCCGG
TACGATGGTTACTGGGAAGAAAATTGTGGCTTAACACTCACTTAACTGCTTTGCAAAAACAGTTTCTTTACTTTTCATCT
AGTTTGGGCTTTCATTTGTGGGAGCTGGATGCAGCTGCAAATCTGCTACGTCTCAAATATTTAATCCATGAAGACTTATT
TGGTAAGGTAAGTTACCTAACCAAAACCATTTCTTTAGACCACAATATTATGGAAATGTTTCGATTACCCTATCAGCAAG
AAATCCTTTATTCTTATCAGAAAAAAATGACTGTGAACCTATCTAAAAGAATACAAAGAGCTCTTTTAGCTAGACACCCG
AAATGGCTACGACGACAAGAAAAGGCTTACTTATCAGGCTATAATTTACTTATGTTAACAACTGATGCTTTTTATCCTCA
ATGGAGACCAGTTCAATCTTCCAGCGGTTTTTGTCAAATTAAAGGAAATCTTCGCCCTTATTATGAAAGTTTTAAAGTCT
ATTATAAAAAAGAAAAGGATAAGAAGGTGCAAACGCTTTTTTCACCAAAATATTATGTTAAAATGGATAGTAATAGAAAA
TGA

Domains

Predicted by InterProScan.

Competence protein CoiA-like family (CoiA_nuc)

(19-265)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus mitis NCTC 12261

42.903

96.875

0.416
  coiA Streptococcus pneumoniae Rx1

41.613

96.875

0.403
  coiA Streptococcus pneumoniae D39

41.613

96.875

0.403
  coiA Streptococcus pneumoniae R6

41.613

96.875

0.403
  coiA Streptococcus pneumoniae TIGR4

41.613

96.875

0.403
  coiA Lactococcus lactis subsp. cremoris KW2

39.329

100

0.403

Multiple sequence alignment