Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   E1949_RS10565 Genome accession   NZ_CP039160
Coordinates   2070373..2070768 (-) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain Lr6     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2065373..2075768
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E1949_RS10540 (E1949_10725) thiE 2065972..2066613 (-) 642 WP_000483164.1 thiamine phosphate synthase -
  E1949_RS10545 (E1949_10730) thiM 2066615..2067406 (-) 792 WP_001108479.1 hydroxyethylthiazole kinase -
  E1949_RS10550 (E1949_10735) thiD 2067390..2068220 (-) 831 WP_000594947.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  E1949_RS10555 (E1949_10740) tenA 2068213..2068902 (-) 690 WP_138079916.1 thiaminase II -
  E1949_RS10560 (E1949_10745) sceD 2069289..2069984 (-) 696 WP_000752000.1 lytic transglycosylase SceD -
  E1949_RS10565 (E1949_10750) ssb 2070373..2070768 (-) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  E1949_RS10570 (E1949_10755) - 2070962..2071402 (+) 441 WP_000846746.1 YwpF-like family protein -
  E1949_RS10575 (E1949_10760) fabZ 2071460..2071900 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  E1949_RS10580 (E1949_10765) murA 2071934..2073199 (-) 1266 WP_000358006.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  E1949_RS10585 (E1949_10770) - 2073310..2073543 (-) 234 WP_000384523.1 DUF1146 family protein -
  E1949_RS10590 (E1949_10775) - 2073675..2073767 (-) 93 WP_031867531.1 hypothetical protein -
  E1949_RS10595 (E1949_10780) - 2074162..2074566 (-) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=357312 E1949_RS10565 WP_000932694.1 2070373..2070768(-) (ssb) [Staphylococcus aureus strain Lr6]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=357312 E1949_RS10565 WP_000932694.1 2070373..2070768(-) (ssb) [Staphylococcus aureus strain Lr6]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992

Multiple sequence alignment