Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   E5491_RS01790 Genome accession   NZ_CP039156
Coordinates   386962..387465 (+) Length   167 a.a.
NCBI ID   WP_000934799.1    Uniprot ID   A0A7U7IE99
Organism   Staphylococcus aureus strain WCUH29     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 381962..392465
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E5491_RS01755 (E5491_01770) - 382902..383747 (+) 846 WP_001557587.1 ParB/RepB/Spo0J family partition protein -
  E5491_RS01760 (E5491_01775) - 383901..384782 (+) 882 WP_000373073.1 mechanosensitive ion channel family protein -
  E5491_RS01765 (E5491_01780) - 384812..385015 (+) 204 WP_000157348.1 DUF951 domain-containing protein -
  E5491_RS01770 (E5491_01785) ychF 385027..386124 (+) 1098 WP_001218732.1 redox-regulated ATPase YchF -
  E5491_RS01775 (E5491_01790) - 386210..386401 (-) 192 WP_001052484.1 hypothetical protein -
  E5491_RS01785 (E5491_01800) rpsF 386645..386941 (+) 297 WP_001261460.1 30S ribosomal protein S6 -
  E5491_RS01790 (E5491_01805) ssbA 386962..387465 (+) 504 WP_000934799.1 single-stranded DNA-binding protein Machinery gene
  E5491_RS01795 (E5491_01810) rpsR 387517..387759 (+) 243 WP_000897044.1 30S ribosomal protein S18 -
  E5491_RS01800 (E5491_01815) - 387875..388981 (-) 1107 WP_000715303.1 Abi family protein -
  E5491_RS01805 (E5491_01820) - 389162..390373 (-) 1212 WP_000270133.1 site-specific integrase -
  E5491_RS01810 (E5491_01825) - 390829..391524 (-) 696 WP_000668213.1 helix-turn-helix domain-containing protein -
  E5491_RS01815 (E5491_01830) - 391668..391880 (+) 213 WP_000794656.1 helix-turn-helix transcriptional regulator -
  E5491_RS01820 (E5491_01835) - 391881..392153 (+) 273 WP_000091734.1 helix-turn-helix domain-containing protein -
  E5491_RS01825 (E5491_01840) - 392165..392311 (+) 147 WP_031824147.1 hypothetical protein -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 18539.12 Da        Isoelectric Point: 4.7305

>NTDB_id=357237 E5491_RS01790 WP_000934799.1 386962..387465(+) (ssbA) [Staphylococcus aureus strain WCUH29]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF

Nucleotide


Download         Length: 504 bp        

>NTDB_id=357237 E5491_RS01790 WP_000934799.1 386962..387465(+) (ssbA) [Staphylococcus aureus strain WCUH29]
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCGCAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

65.341

100

0.689
  ssb Latilactobacillus sakei subsp. sakei 23K

54.971

100

0.563
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.491

63.473

0.371
  ssb Glaesserella parasuis strain SC1401

34.463

100

0.365

Multiple sequence alignment