Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | E5491_RS01790 | Genome accession | NZ_CP039156 |
| Coordinates | 386962..387465 (+) | Length | 167 a.a. |
| NCBI ID | WP_000934799.1 | Uniprot ID | A0A7U7IE99 |
| Organism | Staphylococcus aureus strain WCUH29 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 386962..409064 | 386962..387465 | within | 0 |
Gene organization within MGE regions
Location: 386962..409064
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| E5491_RS01790 (E5491_01805) | ssbA | 386962..387465 (+) | 504 | WP_000934799.1 | single-stranded DNA-binding protein | Machinery gene |
| E5491_RS01795 (E5491_01810) | rpsR | 387517..387759 (+) | 243 | WP_000897044.1 | 30S ribosomal protein S18 | - |
| E5491_RS01800 (E5491_01815) | - | 387875..388981 (-) | 1107 | WP_000715303.1 | Abi family protein | - |
| E5491_RS01805 (E5491_01820) | - | 389162..390373 (-) | 1212 | WP_000270133.1 | site-specific integrase | - |
| E5491_RS01810 (E5491_01825) | - | 390829..391524 (-) | 696 | WP_000668213.1 | helix-turn-helix domain-containing protein | - |
| E5491_RS01815 (E5491_01830) | - | 391668..391880 (+) | 213 | WP_000794656.1 | helix-turn-helix transcriptional regulator | - |
| E5491_RS01820 (E5491_01835) | - | 391881..392153 (+) | 273 | WP_000091734.1 | helix-turn-helix domain-containing protein | - |
| E5491_RS01825 (E5491_01840) | - | 392165..392311 (+) | 147 | WP_031824147.1 | hypothetical protein | - |
| E5491_RS01830 (E5491_01845) | - | 392304..392513 (+) | 210 | WP_001058486.1 | hypothetical protein | - |
| E5491_RS01835 (E5491_01850) | - | 392516..392839 (+) | 324 | WP_001103945.1 | DUF1474 family protein | - |
| E5491_RS01840 (E5491_01855) | - | 392904..393773 (+) | 870 | WP_001002724.1 | primase alpha helix C-terminal domain-containing protein | - |
| E5491_RS01845 (E5491_01860) | - | 393787..395496 (+) | 1710 | WP_000447455.1 | DUF927 domain-containing protein | - |
| E5491_RS01850 (E5491_01865) | - | 395809..396189 (+) | 381 | WP_000356939.1 | hypothetical protein | - |
| E5491_RS01855 (E5491_01870) | - | 396186..396827 (+) | 642 | WP_001019767.1 | hypothetical protein | - |
| E5491_RS01860 (E5491_01875) | - | 397277..397618 (+) | 342 | WP_001190615.1 | hypothetical protein | - |
| E5491_RS01865 (E5491_01880) | - | 397630..398208 (+) | 579 | WP_000846280.1 | hypothetical protein | - |
| E5491_RS01870 (E5491_01885) | - | 398226..398444 (+) | 219 | WP_000536904.1 | capsid morphogenesis B protein | - |
| E5491_RS01875 (E5491_01890) | - | 398495..399022 (+) | 528 | WP_000771378.1 | spore coat protein | - |
| E5491_RS01880 (E5491_01895) | - | 399154..399366 (+) | 213 | WP_045181470.1 | hypothetical protein | - |
| E5491_RS01885 (E5491_01900) | - | 399363..399932 (+) | 570 | WP_001293074.1 | terminase small subunit | - |
| E5491_RS01890 (E5491_01905) | - | 400147..400719 (+) | 573 | WP_000337708.1 | hypothetical protein | - |
| E5491_RS01895 (E5491_01910) | - | 400740..401036 (+) | 297 | WP_000523349.1 | hypothetical protein | - |
| E5491_RS01900 (E5491_01915) | - | 401036..401476 (+) | 441 | WP_000146510.1 | protein-export chaperone SecB | - |
| E5491_RS01905 (E5491_01920) | - | 401782..402540 (+) | 759 | WP_001059540.1 | hypothetical protein | - |
| E5491_RS15310 | - | 402992..403108 (+) | 117 | Protein_368 | hypothetical protein | - |
| E5491_RS01910 (E5491_01925) | - | 403351..403503 (+) | 153 | WP_001795626.1 | hypothetical protein | - |
| E5491_RS01915 (E5491_01930) | - | 403574..403684 (+) | 111 | WP_000139423.1 | hypothetical protein | - |
| E5491_RS01920 (E5491_01935) | - | 403686..403871 (+) | 186 | WP_001286805.1 | hypothetical protein | - |
| E5491_RS01925 (E5491_01940) | - | 404667..405605 (-) | 939 | WP_001817700.1 | Abi family protein | - |
| E5491_RS01930 (E5491_01945) | - | 405644..406357 (-) | 714 | Protein_373 | tyrosine-type recombinase/integrase | - |
| E5491_RS01935 (E5491_01950) | selX | 406563..407174 (+) | 612 | WP_000475325.1 | staphylococcal enterotoxin-like toxin X | - |
| E5491_RS01940 (E5491_01955) | - | 407543..407911 (+) | 369 | WP_000849163.1 | YxeA family protein | - |
| E5491_RS01945 (E5491_01960) | - | 408092..408664 (+) | 573 | WP_000769722.1 | PepSY domain-containing protein | - |
| E5491_RS01950 (E5491_01965) | - | 408801..409064 (-) | 264 | WP_001055897.1 | helix-turn-helix transcriptional regulator | - |
Sequence
Protein
Download Length: 167 a.a. Molecular weight: 18539.12 Da Isoelectric Point: 4.7305
>NTDB_id=357237 E5491_RS01790 WP_000934799.1 386962..387465(+) (ssbA) [Staphylococcus aureus strain WCUH29]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF
Nucleotide
Download Length: 504 bp
>NTDB_id=357237 E5491_RS01790 WP_000934799.1 386962..387465(+) (ssbA) [Staphylococcus aureus strain WCUH29]
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCGCAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCGCAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
65.341 |
100 |
0.689 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
54.971 |
100 |
0.563 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
58.491 |
63.473 |
0.371 |
| ssb | Glaesserella parasuis strain SC1401 |
34.463 |
100 |
0.365 |