Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   E5Y90_RS13230 Genome accession   NZ_CP039143
Coordinates   2789381..2789953 (-) Length   190 a.a.
NCBI ID   WP_174660430.1    Uniprot ID   -
Organism   Acinetobacter sp. 10FS3-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2784381..2794953
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E5Y90_RS13220 (E5Y90_13260) - 2786450..2788006 (-) 1557 WP_174660428.1 site-specific integrase -
  E5Y90_RS13225 (E5Y90_13265) - 2787999..2789225 (-) 1227 WP_174660429.1 site-specific integrase -
  E5Y90_RS13230 (E5Y90_13270) ssb 2789381..2789953 (-) 573 WP_174660430.1 single-stranded DNA-binding protein Machinery gene
  E5Y90_RS13235 (E5Y90_13275) - 2790002..2791366 (-) 1365 WP_174660431.1 MFS transporter -
  E5Y90_RS13240 (E5Y90_13280) - 2791518..2792606 (-) 1089 WP_151205081.1 DUF475 domain-containing protein -
  E5Y90_RS13245 (E5Y90_13285) tenA 2792828..2793505 (+) 678 WP_151206879.1 thiaminase II -
  E5Y90_RS13250 (E5Y90_13290) - 2793654..2793845 (-) 192 WP_174660432.1 hypothetical protein -

Sequence

Protein


Download         Length: 190 a.a.        Molecular weight: 20874.65 Da        Isoelectric Point: 6.4820

>NTDB_id=357233 E5Y90_RS13230 WP_174660430.1 2789381..2789953(-) (ssb) [Acinetobacter sp. 10FS3-1]
MRGVNKVILVGTLGRDPETKTFPNGGSLTQFSIATSDSWTDKNTGERKEQTEWHRIVLHNRLGEIAQQYLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGEQMQMLDSARQQGEQGDNGFNQPRFNNNQGGYGNNNPQGGYGSAPQQAGFNNNQGGGY
GNNNPGGFAPKAQPAPTPAPAADLDDDLPF

Nucleotide


Download         Length: 573 bp        

>NTDB_id=357233 E5Y90_RS13230 WP_174660430.1 2789381..2789953(-) (ssb) [Acinetobacter sp. 10FS3-1]
ATGCGTGGTGTAAATAAGGTTATTTTGGTTGGTACTTTAGGTCGAGATCCTGAAACAAAAACTTTCCCCAATGGGGGCTC
CCTTACACAGTTTTCGATAGCAACCAGCGACTCGTGGACAGATAAAAATACCGGTGAGCGTAAAGAGCAAACAGAATGGC
ACCGTATTGTGCTGCACAACCGTTTAGGTGAAATTGCACAACAATACCTGCGCAAAGGTTCTAAAGTGTATATCGAAGGT
TCATTGCGTACCCGTCAATGGACCGATCAGAATGGTCAGGAACGCTATACAACAGAAATCCGTGGCGAACAAATGCAGAT
GCTAGATTCGGCACGCCAACAAGGTGAACAGGGCGACAATGGTTTTAACCAGCCGCGCTTTAACAATAATCAGGGCGGCT
ATGGCAATAATAACCCGCAAGGTGGCTATGGTTCAGCGCCACAGCAAGCTGGTTTCAATAACAACCAGGGTGGGGGGTAT
GGCAACAATAACCCGGGCGGCTTTGCACCCAAAGCACAGCCGGCGCCAACTCCGGCACCTGCGGCCGATCTAGATGATGA
TTTACCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

51.5

100

0.542
  ssb Vibrio cholerae strain A1552

44.5

100

0.468
  ssb Neisseria meningitidis MC58

40.642

98.421

0.4
  ssb Neisseria gonorrhoeae MS11

39.153

99.474

0.389

Multiple sequence alignment