Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   E5221_RS08560 Genome accession   NZ_CP039127
Coordinates   1832992..1835202 (+) Length   736 a.a.
NCBI ID   WP_247847124.1    Uniprot ID   -
Organism   Pseudomonas sp. A2     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1827992..1840202
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E5221_RS08540 (E5221_08805) - 1829857..1830480 (+) 624 WP_182328560.1 glutathione S-transferase -
  E5221_RS08545 (E5221_08810) - 1830625..1831557 (+) 933 WP_013971560.1 ABC transporter ATP-binding protein -
  E5221_RS08550 (E5221_08815) - 1831554..1832333 (+) 780 WP_015269397.1 ABC transporter permease -
  E5221_RS08555 (E5221_08820) - 1832343..1832849 (-) 507 Protein_1664 DUF2062 domain-containing protein -
  E5221_RS08560 (E5221_08825) comA 1832992..1835202 (+) 2211 WP_247847124.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  E5221_RS08565 (E5221_08830) exbB 1835618..1836253 (+) 636 WP_003259970.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  E5221_RS08570 (E5221_08835) - 1836250..1836684 (+) 435 WP_013971564.1 biopolymer transporter ExbD -
  E5221_RS08575 (E5221_08840) lpxK 1836684..1837685 (+) 1002 WP_247847126.1 tetraacyldisaccharide 4'-kinase -
  E5221_RS08580 (E5221_08845) - 1837730..1837915 (+) 186 WP_011532874.1 Trm112 family protein -
  E5221_RS08585 (E5221_08850) kdsB 1837912..1838676 (+) 765 WP_182328556.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  E5221_RS08590 (E5221_08855) - 1838676..1839140 (+) 465 WP_003259973.1 low molecular weight protein-tyrosine-phosphatase -
  E5221_RS08595 (E5221_08860) murB 1839137..1840156 (+) 1020 WP_061552362.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 736 a.a.        Molecular weight: 79420.41 Da        Isoelectric Point: 10.5462

>NTDB_id=357183 E5221_RS08560 WP_247847124.1 1832992..1835202(+) (comA) [Pseudomonas sp. A2]
MRTGMFALALGLLCLGFLPALPSVGWLVLLAVAGGLGLFTRLWPLGCFLLGLCWACWSAQQALDDRLATGLDGRTLWLEG
RVVGLPTRTAQGVRFELDAARSRRAELPQRLQLSWFDGPPLRAGEQWRLAVTLQRPAGLLNPHGPDREAQLLARRVGATG
TVKAGQLLAPVVGGWRDTLRQRLLAVEANGRQAALVALVLGDGAGLAREDWQTLQATGTVHLLVVSGQHIGLVAGLLYGL
VAGLARWGLWPARLPWVPWACGLAMAAALAYGWLAGGGVPVQRACLMLAVVLLWRLRFRQLGATLPLLLALVAVLLLEPL
AALLPGFWLSFAAVATLVYCFSARLGSWRPWQAWTRAQWVIAIGLLPVLLATGLPVSLSAPLANLVAVPWVSLAVLPLAL
LGALLLPLGGVGEALLWLAGGLLDVLFRLLALAAQQPAWLPAALPLWAWLLVCLGALLVLMPRGVPLRGLGGVMLLALWV
PRETVPFGQVEVWQLDVGQGLAVLLRTRHHNLLYDAGPARGESDLGERVVLPTLRKLGVGSLDLMLVSHAHADHAGGAGA
IMRGLPVERVIGGELLDDLQLQPCVSGEQWMWDGVRFSMWRWADGQSSNDRSCVLLVEAQGERLLLAGDMEAGAERAWLA
ATEAPRIDWLQSPHHGSRSSSSEAFIRATAPRGVLISRGRNNSFGHPHSQVVERYRRHGVVMHDTAEQGALRLVLGRLGE
VEGVRGQRRFWRVRVQ

Nucleotide


Download         Length: 2211 bp        

>NTDB_id=357183 E5221_RS08560 WP_247847124.1 1832992..1835202(+) (comA) [Pseudomonas sp. A2]
ATGCGCACAGGGATGTTTGCGCTCGCGCTCGGGCTGTTGTGTCTGGGCTTTCTCCCCGCATTGCCATCGGTCGGATGGCT
GGTGCTGCTGGCTGTAGCCGGTGGCCTCGGCCTGTTTACCCGGCTGTGGCCACTGGGCTGTTTTCTGTTGGGCCTGTGTT
GGGCCTGCTGGTCTGCGCAGCAGGCGCTGGATGACCGCCTGGCAACCGGGCTGGATGGCCGCACCTTGTGGCTTGAGGGC
CGGGTGGTCGGCCTGCCGACCCGGACTGCGCAGGGTGTGCGCTTCGAGCTGGACGCGGCCCGCTCGCGGCGGGCAGAGCT
GCCGCAGCGCCTGCAACTGAGCTGGTTCGACGGCCCGCCGCTGCGCGCGGGCGAGCAGTGGCGGCTGGCGGTGACCTTGC
AGCGCCCGGCCGGGCTGCTCAACCCGCATGGGCCGGACCGTGAGGCGCAATTGCTGGCGCGGCGGGTCGGTGCGACCGGT
ACGGTCAAGGCTGGGCAGTTGCTGGCGCCGGTTGTCGGCGGCTGGCGCGACACGCTGCGCCAGCGCCTGCTGGCAGTCGA
GGCCAATGGCCGGCAGGCAGCGTTGGTGGCGCTGGTGCTTGGCGACGGGGCGGGCCTGGCCCGGGAGGACTGGCAAACGT
TGCAGGCCACCGGCACGGTGCACTTGCTGGTGGTCTCTGGCCAGCACATCGGCCTGGTTGCCGGCTTGCTGTATGGCCTG
GTTGCCGGGCTGGCGCGTTGGGGGCTGTGGCCCGCTCGTCTGCCGTGGGTGCCCTGGGCGTGTGGCCTGGCCATGGCTGC
GGCACTGGCCTACGGTTGGTTGGCTGGTGGCGGTGTACCGGTGCAGCGTGCCTGCCTGATGCTGGCCGTGGTGTTGCTCT
GGCGCCTGCGTTTTCGCCAATTGGGTGCGACCTTGCCGTTGTTGCTGGCGCTGGTTGCCGTACTGTTGCTGGAACCGCTG
GCCGCGCTGCTGCCCGGGTTCTGGCTGTCGTTCGCGGCCGTGGCCACGCTTGTCTATTGCTTCAGTGCCCGCCTGGGCAG
CTGGCGGCCCTGGCAGGCCTGGACGCGGGCGCAATGGGTGATTGCGATCGGCTTGCTGCCGGTACTGCTGGCTACGGGCT
TGCCGGTGAGCTTGAGTGCGCCGCTGGCCAACCTTGTTGCGGTGCCGTGGGTCAGCTTGGCAGTGCTGCCATTGGCGTTG
CTGGGCGCTTTGCTGCTGCCGTTGGGCGGGGTAGGGGAGGCGCTGCTCTGGCTGGCGGGCGGTTTGCTTGATGTGCTTTT
CCGGCTGCTGGCGCTGGCGGCGCAGCAGCCGGCGTGGCTGCCAGCAGCCCTGCCGTTGTGGGCCTGGCTGCTGGTGTGCC
TGGGCGCGCTGCTGGTTTTGATGCCCCGTGGCGTTCCACTGCGCGGGTTGGGTGGCGTAATGCTGCTGGCGCTGTGGGTA
CCCCGGGAGACGGTGCCGTTCGGCCAGGTCGAGGTCTGGCAGCTGGACGTCGGCCAGGGGCTGGCAGTGCTTTTGCGCAC
CCGGCATCACAACCTGCTGTACGACGCCGGGCCGGCCAGGGGAGAGAGCGACCTGGGCGAGCGGGTGGTGTTGCCGACCT
TGCGCAAGCTGGGGGTGGGCAGCCTGGACCTGATGCTGGTCAGCCACGCCCATGCCGACCACGCCGGTGGTGCTGGCGCA
ATCATGCGTGGCCTGCCGGTCGAACGGGTGATCGGCGGCGAATTGCTGGATGACCTGCAACTGCAACCTTGCGTAAGTGG
CGAGCAGTGGATGTGGGATGGCGTGCGCTTTTCGATGTGGCGCTGGGCCGATGGGCAGAGCAGCAATGACCGCTCCTGTG
TGTTGTTGGTCGAGGCGCAGGGTGAGCGGTTGTTGCTGGCGGGAGACATGGAGGCCGGTGCCGAACGGGCCTGGCTGGCG
GCCACGGAAGCACCGCGGATCGACTGGTTGCAGTCGCCGCATCACGGCAGCCGCAGTTCGTCCAGCGAGGCCTTCATCCG
CGCCACGGCGCCGCGCGGGGTACTGATTTCGCGCGGGCGCAACAACAGCTTCGGGCACCCGCACTCGCAAGTGGTCGAAC
GTTATCGGCGGCATGGGGTGGTGATGCATGACACGGCGGAGCAGGGGGCGTTGCGGTTGGTGCTGGGGAGGCTGGGGGAG
GTGGAGGGTGTGCGGGGGCAGAGGCGGTTTTGGCGGGTTCGGGTGCAGTAA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(496-673)

Competence protein (Competence)

(198-463)

Domain of unknown function (DUF4131) (DUF4131)

(21-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

59.444

97.826

0.582
  comA Ralstonia pseudosolanacearum GMI1000

34.783

100

0.37

Multiple sequence alignment