Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   E5221_RS08565 Genome accession   NZ_CP039127
Coordinates   1835618..1836253 (+) Length   211 a.a.
NCBI ID   WP_003259970.1    Uniprot ID   V9UW47
Organism   Pseudomonas sp. A2     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1830618..1841253
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E5221_RS08545 (E5221_08810) - 1830625..1831557 (+) 933 WP_013971560.1 ABC transporter ATP-binding protein -
  E5221_RS08550 (E5221_08815) - 1831554..1832333 (+) 780 WP_015269397.1 ABC transporter permease -
  E5221_RS08555 (E5221_08820) - 1832343..1832849 (-) 507 Protein_1664 DUF2062 domain-containing protein -
  E5221_RS08560 (E5221_08825) comA 1832992..1835202 (+) 2211 WP_247847124.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  E5221_RS08565 (E5221_08830) exbB 1835618..1836253 (+) 636 WP_003259970.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  E5221_RS08570 (E5221_08835) - 1836250..1836684 (+) 435 WP_013971564.1 biopolymer transporter ExbD -
  E5221_RS08575 (E5221_08840) lpxK 1836684..1837685 (+) 1002 WP_247847126.1 tetraacyldisaccharide 4'-kinase -
  E5221_RS08580 (E5221_08845) - 1837730..1837915 (+) 186 WP_011532874.1 Trm112 family protein -
  E5221_RS08585 (E5221_08850) kdsB 1837912..1838676 (+) 765 WP_182328556.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  E5221_RS08590 (E5221_08855) - 1838676..1839140 (+) 465 WP_003259973.1 low molecular weight protein-tyrosine-phosphatase -
  E5221_RS08595 (E5221_08860) murB 1839137..1840156 (+) 1020 WP_061552362.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22855.16 Da        Isoelectric Point: 7.3616

>NTDB_id=357184 E5221_RS08565 WP_003259970.1 1835618..1836253(+) (exbB) [Pseudomonas sp. A2]
MWELVKSGGWMMLPIILSSIAAMAIVVERLWTLRVSRVTPPHLLGQVWIWIKDKQLTSDKLKALRADSPLGEILAAGLAN
SRHGREIMKECIEEAASRVIHELERYISTLGTIAAMAPLLGLLGTVLGMIDIFSAFMGSQMTANAAVLAGGISKALVTTA
AGLMVGIPAVFFHRFLLRRIDELVVGMEQEAIKLVEVIQGDREVEVAGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=357184 E5221_RS08565 WP_003259970.1 1835618..1836253(+) (exbB) [Pseudomonas sp. A2]
GTGTGGGAATTGGTCAAGTCCGGCGGTTGGATGATGCTGCCGATCATTCTGAGCTCCATCGCTGCCATGGCTATCGTCGT
CGAGCGCCTGTGGACCCTGCGCGTCAGTCGCGTCACCCCGCCGCACCTGCTCGGCCAGGTGTGGATATGGATCAAGGACA
AGCAACTGACCAGTGACAAGCTCAAGGCCCTGCGTGCTGATTCGCCATTGGGCGAAATCCTCGCCGCCGGCCTGGCCAAC
TCGCGCCATGGTCGCGAAATCATGAAGGAATGCATCGAGGAGGCCGCCTCGCGCGTCATCCACGAACTGGAACGCTACAT
CAGCACCCTCGGCACCATCGCCGCCATGGCCCCGCTGCTGGGCCTGCTGGGCACCGTGCTGGGCATGATCGACATCTTCA
GCGCCTTCATGGGCTCGCAGATGACCGCCAACGCCGCAGTGCTGGCCGGTGGTATCTCCAAGGCCCTGGTCACCACCGCG
GCCGGCCTGATGGTCGGTATCCCGGCGGTATTCTTCCACCGCTTCCTGCTGCGCCGTATCGATGAGTTGGTGGTGGGCAT
GGAGCAGGAAGCTATCAAGTTGGTGGAAGTGATCCAGGGCGACCGTGAAGTGGAAGTGGCCGGAGGCAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB V9UW47

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

82.938

100

0.829

Multiple sequence alignment