NTDB

Overview

Name	comM	Type	Machinery gene
Locus tag	A7X85_RS33250	Genome accession	NZ_CP047019
Coordinates	7370156..7371781 (+)	Length	541 a.a.
NCBI ID	WP_223009292.1	Uniprot ID	-
Organism	Streptomyces sp. ST1015
Function	promote branch migration; interact with DprA; integration of tDNA (predicted from homology) Homologous recombination

Genomic Context

Location: 7365156..7376781

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
A7X85_RS33220 (A7X85_33385)	lepB	7365697..7366794 (+)	1098	WP_055719898.1	signal peptidase I	-
A7X85_RS33225 (A7X85_33390)	lepB	7366682..7367656 (+)	975	WP_112472276.1	signal peptidase I	-
A7X85_RS33230 (A7X85_33395)	lepB	7367917..7368711 (+)	795	WP_223009289.1	signal peptidase I	-
A7X85_RS33235 (A7X85_33400)	-	7368767..7369288 (+)	522	WP_112477287.1	NUDIX hydrolase	-
A7X85_RS33240 (A7X85_33405)	-	7369345..7369653 (+)	309	WP_010353840.1	DUF2469 domain-containing protein	-
A7X85_RS33245 (A7X85_33410)	-	7369753..7370154 (+)	402	WP_112477286.1	YraN family protein	-
A7X85_RS33250 (A7X85_33415)	comM	7370156..7371781 (+)	1626	WP_223009292.1	YifB family Mg chelatase-like AAA ATPase	Machinery gene
A7X85_RS33255 (A7X85_33420)	dprA	7371837..7372986 (+)	1150	Protein_6631	DNA-processing protein DprA	-
A7X85_RS33260 (A7X85_33425)	whiG	7373240..7374079 (+)	840	WP_055724640.1	RNA polymerase sigma factor WhiG	-
A7X85_RS33265 (A7X85_33430)	-	7374143..7374697 (+)	555	WP_112477054.1	TetR/AcrR family transcriptional regulator	-
A7X85_RS33270 (A7X85_33435)	-	7374589..7375209 (-)	621	WP_223009294.1	M23 family metallopeptidase	-
A7X85_RS33275 (A7X85_33440)	rpsB	7375403..7376333 (+)	931	Protein_6635	30S ribosomal protein S2	-

Sequence

Protein

Download Length: 541 a.a. Molecular weight: 56079.42 Da Isoelectric Point: 6.1952

                                >NTDB_id=356975 A7X85_RS33250 WP_223009292.1 7370156..7371781(+) (comM) [Streptomyces sp. ST1015]

MGFARTCSVALVGVEGVVVEVQADLEPGVAAFTLVGLPDKSLTESRDRVRAAVVNSGGEWPQKKLTVGLSPASVPKAGSG

FDLAVACAVLGAAERIDPRVLADIVMIGELGLDGRVRPVRGILPAVLAAAESGYQQVVVPECAAAEASLVPGVSVLGVRS

LRQLIAVLADEPVPEEEPDEAGRPDPLLAGLRVPGTGAATGMHSMGAAQQDQGHDLADVVGQLSARTAVEVSAAGGHHLF

LEGPPGAGKTMLAERLPAVLPPLGREDSLEVTAVHSVAGLLPPGKPLVDVAPYCAPHHSATMQALVGGGPGIARPGAVSL

AHRGVLFLDEAPEFNSTALDALRQPLEAGHVVIARSAGVVRFPARFLMVLAANPCPCGRFSQRDTLCECPPSVIRRYQAR

LSGPLLDRVDLRVEVDPVSRAELAYRGPGGESTATVAARVLAARERAAARLAGTPWRTNSEVPGRELRSRWQAVPGAMDE

AERGLERGVLTARGVDRVLRVAWTVADLVGHDRPDAADVALALQLRTGVPRGVPMAIGALT

Nucleotide

Download Length: 1626 bp

                                >NTDB_id=356975 A7X85_RS33250 WP_223009292.1 7370156..7371781(+) (comM) [Streptomyces sp. ST1015]

ATGGGGTTCGCACGCACGTGTTCCGTGGCCCTGGTGGGGGTCGAGGGAGTCGTCGTCGAGGTCCAGGCGGACCTGGAGCC

GGGGGTGGCGGCGTTCACGTTGGTGGGGTTGCCGGACAAGAGCTTGACGGAGAGCCGGGACCGGGTACGGGCGGCGGTCG

TCAACTCGGGTGGCGAGTGGCCGCAGAAGAAGCTCACGGTCGGGCTCAGCCCGGCGTCGGTGCCCAAGGCGGGCTCCGGC

TTCGACCTCGCCGTCGCCTGCGCGGTGCTCGGCGCGGCGGAGCGGATCGACCCGAGGGTGCTGGCCGACATCGTGATGAT

CGGCGAGCTGGGGCTGGACGGACGGGTACGTCCCGTGCGGGGCATCCTGCCCGCCGTGCTGGCCGCCGCCGAGTCGGGGT

ACCAGCAGGTCGTCGTCCCGGAGTGCGCGGCGGCGGAGGCGTCGCTGGTCCCCGGGGTGTCCGTGCTCGGGGTGCGCAGC

CTGCGGCAGCTCATCGCCGTCCTCGCGGACGAGCCGGTGCCCGAGGAGGAGCCTGACGAGGCGGGGCGGCCCGATCCGCT

GCTGGCGGGCCTGCGGGTGCCCGGGACGGGCGCGGCCACCGGCATGCACAGCATGGGCGCGGCCCAGCAGGACCAGGGCC

ACGACCTCGCCGACGTCGTGGGCCAGCTCTCGGCCCGCACGGCCGTGGAGGTCTCGGCGGCCGGTGGACACCACCTGTTT

CTGGAGGGTCCGCCAGGAGCCGGCAAGACCATGCTGGCGGAGCGGCTGCCGGCCGTGCTGCCCCCGCTCGGGCGGGAGGA

CTCCCTGGAGGTCACGGCCGTCCACTCGGTGGCCGGACTGCTGCCGCCGGGCAAGCCGCTCGTCGACGTGGCCCCGTACT

GCGCCCCGCACCACTCGGCCACGATGCAGGCGCTCGTCGGAGGCGGCCCCGGCATCGCCCGGCCCGGAGCGGTGTCCCTG

GCTCATCGCGGGGTGCTGTTTCTCGACGAGGCCCCGGAGTTCAACAGCACCGCGCTCGACGCCCTCCGACAGCCCCTGGA

GGCGGGGCACGTGGTGATCGCCCGCAGCGCCGGCGTGGTGCGGTTCCCGGCGCGCTTCCTCATGGTGCTGGCGGCGAACC

CGTGCCCCTGCGGGAGGTTCTCGCAGCGGGACACGCTGTGCGAGTGCCCGCCTTCCGTGATCCGCCGCTACCAGGCCCGG

CTCTCCGGGCCGCTCCTCGACCGGGTCGACCTGAGGGTCGAGGTGGACCCCGTCAGCCGCGCCGAACTGGCGTACCGGGG

GCCCGGAGGGGAGTCCACGGCGACGGTCGCCGCGCGGGTGCTGGCCGCCCGGGAGCGCGCGGCGGCCCGGCTGGCCGGCA

CGCCGTGGCGGACCAACAGCGAAGTCCCCGGCCGGGAACTGCGCAGCCGCTGGCAGGCGGTGCCCGGTGCGATGGACGAG

GCCGAGCGGGGCCTCGAACGCGGTGTGCTCACCGCCCGGGGCGTCGACCGCGTCCTGCGGGTCGCCTGGACGGTCGCCGA

CCTCGTCGGCCACGACCGCCCCGACGCGGCCGACGTCGCCCTGGCGCTGCAACTGCGGACCGGGGTACCGCGCGGGGTGC

CGATGGCGATCGGCGCGCTGACCTGA

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-141)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(215-422)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(430-526)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
comM	Vibrio cholerae strain A1552	40.417	97.412	0.394
comM	Vibrio cholerae O1 biovar El Tor strain E7946	40.417	97.412	0.394
comM	Vibrio campbellii strain DS40M4	38.462	98.521	0.379
comM	Haemophilus influenzae Rd KW20	37.828	98.706	0.373
comM	Acinetobacter baylyi ADP1	39.173	93.9	0.368
comM	Legionella pneumophila str. Paris	38.402	94.824	0.364
comM	Legionella pneumophila strain ERS1305867	38.402	94.824	0.364

Detailed information NTG0356975