Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | E5093_RS14340 | Genome accession | NZ_CP039031 |
| Coordinates | 3005072..3005638 (-) | Length | 188 a.a. |
| NCBI ID | WP_177156127.1 | Uniprot ID | - |
| Organism | Acinetobacter indicus strain yy_1 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Genomic island | 2972772..3004916 | 3005072..3005638 | flank | 156 |
| IScluster/Tn | 2997025..3004483 | 3005072..3005638 | flank | 589 |
Gene organization within MGE regions
Location: 2972772..3005638
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| E5093_RS14165 (E5093_14285) | - | 2972772..2973752 (+) | 981 | WP_177156118.1 | DUF4917 family protein | - |
| E5093_RS14170 (E5093_14290) | - | 2973805..2974371 (-) | 567 | WP_177156230.1 | recombinase family protein | - |
| E5093_RS14175 (E5093_14295) | - | 2974555..2975454 (-) | 900 | WP_177156119.1 | cation diffusion facilitator family transporter | - |
| E5093_RS14180 (E5093_14300) | - | 2975541..2978681 (-) | 3141 | WP_177156120.1 | efflux RND transporter permease subunit | - |
| E5093_RS14185 (E5093_14305) | - | 2978671..2979900 (-) | 1230 | WP_177156121.1 | efflux RND transporter periplasmic adaptor subunit | - |
| E5093_RS14190 (E5093_14310) | - | 2979902..2981227 (-) | 1326 | WP_177156122.1 | TolC family protein | - |
| E5093_RS14195 (E5093_14315) | - | 2981276..2981692 (-) | 417 | WP_227591950.1 | cation efflux protein, CzcI-like | - |
| E5093_RS14200 (E5093_14320) | - | 2981979..2983069 (-) | 1091 | Protein_2756 | IS3 family transposase | - |
| E5093_RS14205 (E5093_14325) | - | 2983136..2983357 (-) | 222 | WP_005180724.1 | hypothetical protein | - |
| E5093_RS14210 (E5093_14330) | - | 2983381..2984301 (-) | 921 | WP_160232246.1 | copper resistance protein B | - |
| E5093_RS14215 (E5093_14335) | - | 2984288..2986141 (-) | 1854 | WP_177156123.1 | copper resistance system multicopper oxidase | - |
| E5093_RS14220 (E5093_14340) | - | 2986231..2986527 (-) | 297 | WP_005006338.1 | hypothetical protein | - |
| E5093_RS14225 (E5093_14345) | - | 2986676..2987356 (+) | 681 | WP_005180717.1 | heavy metal response regulator transcription factor | - |
| E5093_RS14230 (E5093_14350) | - | 2987349..2988749 (+) | 1401 | WP_160232245.1 | heavy metal sensor histidine kinase | - |
| E5093_RS14235 (E5093_14355) | - | 2988788..2990071 (-) | 1284 | WP_004663995.1 | MgtC/SapB family protein | - |
| E5093_RS14240 (E5093_14360) | - | 2990068..2992443 (-) | 2376 | WP_160232244.1 | heavy metal translocating P-type ATPase | - |
| E5093_RS14245 (E5093_14365) | - | 2992455..2993105 (-) | 651 | WP_160232243.1 | methyltransferase family protein | - |
| E5093_RS14250 (E5093_14370) | - | 2993126..2993374 (-) | 249 | Protein_2766 | DUF2933 domain-containing protein | - |
| E5093_RS14255 (E5093_14375) | - | 2993401..2993832 (-) | 432 | WP_004695737.1 | hypothetical protein | - |
| E5093_RS14260 (E5093_14380) | - | 2994269..2994511 (-) | 243 | WP_004281876.1 | DUF2789 family protein | - |
| E5093_RS14265 (E5093_14385) | - | 2994863..2995243 (+) | 381 | WP_004681441.1 | copper resistance protein CopC | - |
| E5093_RS14270 (E5093_14390) | - | 2995308..2996189 (+) | 882 | WP_177156124.1 | copper resistance D family protein | - |
| E5093_RS14275 (E5093_14395) | - | 2996659..2996853 (+) | 195 | WP_004281879.1 | heavy-metal-associated domain-containing protein | - |
| E5093_RS14280 (E5093_14400) | - | 2997025..2997726 (-) | 702 | WP_177156125.1 | IS6-like element IS1006 family transposase | - |
| E5093_RS14285 (E5093_14405) | - | 2997789..2998367 (-) | 579 | Protein_2773 | IS982-like element ISAcsp2 family transposase | - |
| E5093_RS14290 (E5093_14415) | - | 2998639..2999427 (-) | 789 | WP_177156126.1 | suppressor of fused domain protein | - |
| E5093_RS14295 (E5093_14420) | - | 2999658..2999852 (+) | 195 | WP_004811689.1 | hypothetical protein | - |
| E5093_RS14300 (E5093_14425) | - | 3000015..3000485 (+) | 471 | WP_016658411.1 | hypothetical protein | - |
| E5093_RS14305 (E5093_14430) | - | 3001008..3001364 (+) | 357 | Protein_2777 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| E5093_RS14310 (E5093_14435) | - | 3001357..3001659 (+) | 303 | WP_001140620.1 | helix-turn-helix domain-containing protein | - |
| E5093_RS14315 (E5093_14440) | - | 3001701..3001862 (-) | 162 | Protein_2779 | IS6 family transposase | - |
| E5093_RS14320 (E5093_14445) | cadR | 3001956..3002348 (-) | 393 | WP_000550240.1 | Cd(II)/Pb(II)-responsive transcriptional regulator | - |
| E5093_RS14325 (E5093_14450) | - | 3002438..3003718 (+) | 1281 | WP_005237495.1 | cation transporter | - |
| E5093_RS14330 (E5093_14455) | - | 3003782..3004483 (+) | 702 | WP_177156125.1 | IS6-like element IS1006 family transposase | - |
| E5093_RS14335 (E5093_14460) | - | 3004536..3004916 (-) | 381 | Protein_2783 | site-specific integrase | - |
| E5093_RS14340 (E5093_14465) | ssb | 3005072..3005638 (-) | 567 | WP_177156127.1 | single-stranded DNA-binding protein | Machinery gene |
Sequence
Protein
Download Length: 188 a.a. Molecular weight: 20670.41 Da Isoelectric Point: 6.4819
>NTDB_id=356855 E5093_RS14340 WP_177156127.1 3005072..3005638(-) (ssb) [Acinetobacter indicus strain yy_1]
MRGVNKVILVGTLGRDPETKTFPNGGSLTQFSIATSDAWTDKTTGERKEQTEWHRIVLHNRLGEIAQQYLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGEQMQMLDSSRQQGEQGDNGFSQPRFNNNQGGGYSNNNQGGYAPQAQGGFNNNNAGGGY
GNQGGYQQPKPAPAATPAPADLDDDLPF
MRGVNKVILVGTLGRDPETKTFPNGGSLTQFSIATSDAWTDKTTGERKEQTEWHRIVLHNRLGEIAQQYLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGEQMQMLDSSRQQGEQGDNGFSQPRFNNNQGGGYSNNNQGGYAPQAQGGFNNNNAGGGY
GNQGGYQQPKPAPAATPAPADLDDDLPF
Nucleotide
Download Length: 567 bp
>NTDB_id=356855 E5093_RS14340 WP_177156127.1 3005072..3005638(-) (ssb) [Acinetobacter indicus strain yy_1]
ATGCGTGGTGTAAATAAGGTCATTTTAGTTGGTACTTTAGGTCGAGATCCAGAAACAAAAACTTTCCCGAATGGTGGCTC
GCTTACTCAATTTTCCATTGCCACCAGTGATGCGTGGACCGATAAAACCACCGGTGAGCGTAAAGAGCAAACCGAATGGC
ACCGTATTGTGCTGCATAACCGTTTAGGTGAAATCGCGCAGCAATACTTACGCAAAGGTTCAAAAGTCTATATTGAAGGT
TCGCTGCGTACCCGTCAGTGGACCGATCAGAATGGTCAGGAACGCTACACCACAGAAATTCGTGGCGAGCAAATGCAGAT
GCTGGACTCTAGTCGTCAGCAAGGTGAGCAGGGCGATAATGGTTTTAGCCAGCCACGTTTTAACAATAACCAGGGCGGTG
GTTATAGCAATAACAACCAGGGTGGCTATGCGCCGCAAGCTCAAGGCGGTTTTAACAACAATAATGCTGGTGGTGGCTAT
GGCAACCAGGGCGGTTATCAGCAACCGAAACCAGCTCCTGCTGCAACGCCTGCACCGGCAGATTTGGATGATGACTTACC
GTTCTGA
ATGCGTGGTGTAAATAAGGTCATTTTAGTTGGTACTTTAGGTCGAGATCCAGAAACAAAAACTTTCCCGAATGGTGGCTC
GCTTACTCAATTTTCCATTGCCACCAGTGATGCGTGGACCGATAAAACCACCGGTGAGCGTAAAGAGCAAACCGAATGGC
ACCGTATTGTGCTGCATAACCGTTTAGGTGAAATCGCGCAGCAATACTTACGCAAAGGTTCAAAAGTCTATATTGAAGGT
TCGCTGCGTACCCGTCAGTGGACCGATCAGAATGGTCAGGAACGCTACACCACAGAAATTCGTGGCGAGCAAATGCAGAT
GCTGGACTCTAGTCGTCAGCAAGGTGAGCAGGGCGATAATGGTTTTAGCCAGCCACGTTTTAACAATAACCAGGGCGGTG
GTTATAGCAATAACAACCAGGGTGGCTATGCGCCGCAAGCTCAAGGCGGTTTTAACAACAATAATGCTGGTGGTGGCTAT
GGCAACCAGGGCGGTTATCAGCAACCGAAACCAGCTCCTGCTGCAACGCCTGCACCGGCAGATTTGGATGATGACTTACC
GTTCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Glaesserella parasuis strain SC1401 |
51.546 |
100 |
0.532 |
| ssb | Vibrio cholerae strain A1552 |
43.939 |
100 |
0.463 |
| ssb | Neisseria meningitidis MC58 |
37.368 |
100 |
0.378 |
| ssb | Neisseria gonorrhoeae MS11 |
37.368 |
100 |
0.378 |