Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   E5A72_RS04695 Genome accession   NZ_CP039025
Coordinates   959181..959816 (+) Length   211 a.a.
NCBI ID   WP_000472273.1    Uniprot ID   A0A9P3CZD1
Organism   Acinetobacter baumannii ATCC 17978 substr. PMR-High     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 954181..964816
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E5A72_RS04680 (E5A72_04680) adeT2 955241..956227 (-) 987 WP_000712907.1 putative multidrug efflux protein AdeT2 -
  E5A72_RS04685 (E5A72_04685) - 956307..957122 (-) 816 WP_000547780.1 NAD-dependent epimerase/dehydratase family protein -
  E5A72_RS04690 (E5A72_04690) recG 957143..959188 (+) 2046 WP_000204953.1 ATP-dependent DNA helicase RecG -
  E5A72_RS04695 (E5A72_04695) comF 959181..959816 (+) 636 WP_000472273.1 ComF family protein Machinery gene
  E5A72_RS04700 (E5A72_04700) - 959819..960220 (-) 402 WP_000849701.1 NUDIX hydrolase -
  E5A72_RS04705 (E5A72_04705) - 960235..960816 (-) 582 WP_001084310.1 TIGR00730 family Rossman fold protein -
  E5A72_RS04710 (E5A72_04710) - 960974..961987 (+) 1014 WP_000888321.1 CorA family divalent cation transporter -
  E5A72_RS04715 (E5A72_04715) - 962057..962344 (-) 288 WP_000250997.1 lipid asymmetry maintenance protein MlaB -
  E5A72_RS04720 (E5A72_04720) - 962356..962997 (-) 642 WP_009518191.1 phospholipid-binding protein MlaC -
  E5A72_RS04725 (E5A72_04725) - 963024..963704 (-) 681 WP_000842362.1 outer membrane lipid asymmetry maintenance protein MlaD -
  E5A72_RS04730 (E5A72_04730) mlaE 963704..964480 (-) 777 WP_001091949.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24565.69 Da        Isoelectric Point: 9.7140

>NTDB_id=356774 E5A72_RS04695 WP_000472273.1 959181..959816(+) (comF) [Acinetobacter baumannii ATCC 17978 substr. PMR-High]
MFKFLNPQYLFQLLSPCLLCEIGTREKYSLCKECWEQLPWLKQTIQRNDQSVLVACHYAYPINRIIQQFKYEQKLHYQTL
LAEVLQQLKFPKVQAIVPMPISKQRLTERGFNQSLLLANLLSKQLKIPVWQPVQRLNEHSQKGLSRLERFENIEQQFVAL
TQEKRRYRRVLIIDDVITTGSSIHALSQALKQLGCTSIHASCLAAASSTSY

Nucleotide


Download         Length: 636 bp        

>NTDB_id=356774 E5A72_RS04695 WP_000472273.1 959181..959816(+) (comF) [Acinetobacter baumannii ATCC 17978 substr. PMR-High]
ATGTTTAAGTTTTTAAACCCACAGTATCTTTTTCAGTTGCTGTCCCCTTGCCTACTTTGCGAAATAGGAACACGGGAAAA
ATACTCTCTTTGTAAAGAATGCTGGGAACAGCTACCGTGGCTTAAGCAAACCATTCAGCGCAATGATCAGTCTGTTCTTG
TGGCCTGTCACTACGCCTATCCAATTAACCGGATCATTCAGCAGTTTAAATATGAACAAAAATTACATTACCAAACCTTA
CTTGCTGAAGTTTTACAGCAATTAAAATTTCCTAAGGTACAAGCGATTGTACCCATGCCTATTTCTAAACAACGTTTAAC
TGAACGTGGTTTTAATCAATCCTTATTACTCGCCAATCTTTTGAGTAAGCAATTAAAAATACCAGTTTGGCAGCCTGTAC
AACGCTTAAATGAGCATTCTCAAAAGGGATTATCTCGACTCGAAAGATTTGAAAATATTGAACAGCAATTTGTTGCGCTC
ACTCAAGAAAAACGGCGTTATCGTCGTGTACTGATTATTGATGATGTAATCACAACAGGAAGTTCAATTCACGCTTTAAG
TCAGGCGCTAAAACAGCTAGGGTGTACATCTATTCATGCCAGTTGCCTAGCTGCTGCTTCATCTACATCATATTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(114-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

100

100

1
  comF Acinetobacter baumannii D1279779

99.052

100

0.991

Multiple sequence alignment