Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   E6A31_RS04745 Genome accession   NZ_CP038996
Coordinates   971079..971564 (+) Length   161 a.a.
NCBI ID   WP_002296241.1    Uniprot ID   -
Organism   Enterococcus faecium strain SRR24     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 966079..976564
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E6A31_RS04725 (E6A31_05075) - 966296..966976 (+) 681 WP_001015311.1 IS6-like element IS1216 family transposase -
  E6A31_RS04730 (E6A31_05080) topB 967125..969329 (+) 2205 WP_025481136.1 type IA DNA topoisomerase -
  E6A31_RS14310 - 969345..969494 (+) 150 WP_002295632.1 hypothetical protein -
  E6A31_RS04735 (E6A31_05085) - 969568..970161 (+) 594 WP_002330563.1 type IV toxin-antitoxin system AbiEi family antitoxin domain-containing protein -
  E6A31_RS04740 (E6A31_05090) - 970177..971076 (+) 900 WP_002322787.1 nucleotidyl transferase AbiEii/AbiGii toxin family protein -
  E6A31_RS04745 (E6A31_05095) ssb 971079..971564 (+) 486 WP_002296241.1 single-stranded DNA-binding protein Machinery gene
  E6A31_RS04750 (E6A31_05100) - 971930..972190 (+) 261 WP_002296240.1 hypothetical protein -
  E6A31_RS04755 (E6A31_05110) - 972631..972837 (+) 207 WP_002296239.1 hypothetical protein -
  E6A31_RS04760 (E6A31_05115) - 972837..973088 (+) 252 WP_002296238.1 hypothetical protein -
  E6A31_RS04765 (E6A31_05120) - 973103..973540 (+) 438 WP_002296237.1 hypothetical protein -
  E6A31_RS04770 (E6A31_05125) - 973533..974240 (+) 708 WP_002353391.1 hypothetical protein -
  E6A31_RS14455 (E6A31_05130) - 974405..974605 (+) 201 WP_002330566.1 hypothetical protein -
  E6A31_RS04775 (E6A31_05135) - 974621..974800 (+) 180 WP_002305761.1 hypothetical protein -
  E6A31_RS04780 (E6A31_05140) - 975141..975404 (+) 264 WP_002287514.1 hypothetical protein -
  E6A31_RS04785 (E6A31_05145) - 975398..975748 (+) 351 WP_002321032.1 type II toxin-antitoxin system PemK/MazF family toxin -
  E6A31_RS04790 (E6A31_05150) - 975772..976386 (-) 615 WP_010729795.1 recombinase family protein -

Sequence

Protein


Download         Length: 161 a.a.        Molecular weight: 17603.43 Da        Isoelectric Point: 5.1732

>NTDB_id=356665 E6A31_RS04745 WP_002296241.1 971079..971564(+) (ssb) [Enterococcus faecium strain SRR24]
MINNVTLVGRLTKDPDLRYTASGTAVATFSLAVNRNFTNQNGNREADFINCVIWRKPAETMATLAKKGSLIGVVGRIQTR
TYDNQQGQRVYVTEVVADNFQLLESKAATESRMHADQSSSSPSPTTFEQRDTATPNNNGLNASQNPFGGQSIDISDDDLP
F

Nucleotide


Download         Length: 486 bp        

>NTDB_id=356665 E6A31_RS04745 WP_002296241.1 971079..971564(+) (ssb) [Enterococcus faecium strain SRR24]
ATGATCAATAATGTAACTTTAGTAGGGCGATTAACTAAAGATCCAGATTTACGTTATACCGCAAGTGGCACAGCAGTGGC
GACTTTTTCCCTAGCCGTTAATCGTAATTTCACGAATCAAAACGGCAATCGAGAAGCTGATTTTATCAATTGCGTGATTT
GGCGCAAACCAGCAGAAACGATGGCGACATTAGCTAAAAAAGGCAGCTTGATCGGCGTTGTCGGACGAATTCAAACACGG
ACTTATGACAACCAGCAAGGACAACGTGTGTATGTGACAGAAGTTGTGGCCGATAACTTCCAACTATTAGAAAGTAAAGC
AGCGACAGAAAGCCGTATGCACGCTGATCAATCGTCCAGCAGTCCAAGCCCTACCACCTTTGAACAACGGGATACAGCGA
CGCCTAACAACAATGGATTGAACGCTTCACAGAATCCATTTGGTGGACAATCAATCGATATTAGCGATGATGATCTACCG
TTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

61.765

100

0.652
  ssbA Bacillus subtilis subsp. subtilis str. 168

54.651

100

0.584
  ssbB Bacillus subtilis subsp. subtilis str. 168

60.377

65.839

0.398
  ssb Glaesserella parasuis strain SC1401

33.146

100

0.366

Multiple sequence alignment