Detailed information    

insolico Bioinformatically predicted

Overview

Name   ideA   Type   Regulator
Locus tag   GPY07_RS04535 Genome accession   NZ_CP046840
Coordinates   1016593..1017276 (+) Length   227 a.a.
NCBI ID   WP_001082329.1    Uniprot ID   -
Organism   Vibrio cholerae strain F9993     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1011593..1022276
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY07_RS04510 - 1012521..1013537 (-) 1017 WP_000862954.1 lambda-exonuclease family protein -
  GPY07_RS19365 - 1013598..1013741 (-) 144 WP_000167275.1 hypothetical protein -
  GPY07_RS04515 bet 1013823..1014641 (-) 819 WP_000414661.1 phage recombination protein Bet -
  GPY07_RS04520 ssb 1014721..1015140 (-) 420 WP_000795987.1 single-stranded DNA-binding protein -
  GPY07_RS04525 - 1015156..1015482 (-) 327 WP_000455721.1 hypothetical protein -
  GPY07_RS04530 - 1015850..1016452 (+) 603 WP_000035786.1 hypothetical protein -
  GPY07_RS04535 ideA 1016593..1017276 (+) 684 WP_001082329.1 endonuclease Regulator
  GPY07_RS04540 - 1017389..1018453 (+) 1065 WP_000852158.1 hypothetical protein -
  GPY07_RS04545 - 1018453..1019538 (+) 1086 WP_000678781.1 hypothetical protein -
  GPY07_RS04550 - 1019545..1020225 (+) 681 WP_000838013.1 hypothetical protein -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 26445.53 Da        Isoelectric Point: 7.5669

>NTDB_id=356400 GPY07_RS04535 WP_001082329.1 1016593..1017276(+) (ideA) [Vibrio cholerae strain F9993]
MNRTNLLVNFLIALLAIPAFAEHPTSFSQAKRFAREIYQDNQSTFYCGCSYNNDGAIDAASCGYEPRKQPKRGDRLEWEH
VVSAWEIGHQRQCWQNGGRRNCEKNDPEFSKMVSDLHNLVPSVGELNGDRSNFRFGMIPNERRSYGQCDFEVDFKDRRAE
PPANRQGDIARIYFYMRDQYGLRLSKQQTQLFEAWSRMDPVDEWEKIRDLKIRSVQGNSNCHVTQSC

Nucleotide


Download         Length: 684 bp        

>NTDB_id=356400 GPY07_RS04535 WP_001082329.1 1016593..1017276(+) (ideA) [Vibrio cholerae strain F9993]
ATGAATAGAACTAATTTGCTCGTTAACTTCTTAATAGCGTTGCTCGCTATCCCTGCATTTGCAGAACACCCAACATCGTT
CAGCCAGGCAAAACGATTTGCCCGAGAAATTTACCAAGACAACCAGAGTACGTTTTACTGTGGATGTAGCTATAACAATG
ATGGTGCGATTGATGCTGCATCTTGCGGATATGAACCAAGGAAGCAACCGAAACGTGGAGATCGCTTAGAGTGGGAGCAC
GTTGTCTCAGCTTGGGAAATTGGCCATCAACGCCAATGCTGGCAAAATGGTGGTCGTCGGAACTGCGAAAAGAATGATCC
TGAGTTTTCTAAAATGGTTTCGGATCTCCATAACCTCGTACCATCTGTAGGAGAGCTCAATGGGGATAGGTCAAATTTTC
GATTTGGCATGATTCCGAATGAACGAAGATCCTATGGTCAATGTGATTTCGAAGTTGATTTCAAAGACCGTCGAGCAGAA
CCACCAGCTAACCGTCAGGGTGATATTGCTAGAATCTATTTCTACATGCGAGATCAATACGGCCTAAGACTAAGCAAGCA
ACAAACTCAGCTATTTGAAGCTTGGTCAAGAATGGACCCTGTTGACGAATGGGAAAAAATACGTGATTTGAAGATTAGAA
GTGTACAAGGAAACAGTAATTGCCATGTTACACAAAGTTGTTAA

Domains

Predicted by InterProScan.

Endonuclease I (Endonuclease_1)

(41-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ideA Vibrio cholerae O1 str. 2010EL-1786

93.392

100

0.934
  dns Vibrio parahaemolyticus RIMD 2210633

53.947

100

0.542
  dns Aliivibrio fischeri ES114

52.609

100

0.533
  dns Vibrio cholerae strain A1552

52.444

99.119

0.52
  dns Campylobacter jejuni RM1221

39.545

96.916

0.383

Multiple sequence alignment