Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   E5135_RS05015 Genome accession   NZ_CP038873
Coordinates   1087724..1088236 (-) Length   170 a.a.
NCBI ID   WP_135953137.1    Uniprot ID   -
Organism   Pasteurella multocida strain FCf45     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1082724..1093236
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E5135_RS04985 (E5135_04990) - 1083178..1083648 (+) 471 WP_000689410.1 thermonuclease family protein -
  E5135_RS04990 (E5135_04995) - 1084384..1085592 (-) 1209 WP_001339197.1 IS4-like element ISVsa5 family transposase -
  E5135_RS04995 (E5135_05000) - 1085532..1085993 (-) 462 WP_135953135.1 toprim domain-containing protein -
  E5135_RS05000 (E5135_05005) - 1086125..1086751 (+) 627 WP_135953136.1 hypothetical protein -
  E5135_RS05005 (E5135_05010) - 1086729..1087022 (-) 294 WP_065189242.1 hypothetical protein -
  E5135_RS05010 (E5135_05015) - 1087162..1087641 (-) 480 WP_065189241.1 hypothetical protein -
  E5135_RS05015 (E5135_05020) ssb 1087724..1088236 (-) 513 WP_135953137.1 single-stranded DNA-binding protein Machinery gene
  E5135_RS05020 (E5135_05025) - 1088951..1089442 (-) 492 WP_135953138.1 DUF3158 family protein -
  E5135_RS05025 (E5135_05030) - 1089483..1090235 (-) 753 WP_135938280.1 TIGR03761 family integrating conjugative element protein -
  E5135_RS05030 (E5135_05035) - 1090450..1091676 (-) 1227 WP_135953139.1 STY4528 family pathogenicity island replication protein -
  E5135_RS05035 (E5135_05040) - 1091837..1092388 (-) 552 WP_110478427.1 DUF2857 domain-containing protein -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 19260.28 Da        Isoelectric Point: 5.0186

>NTDB_id=356130 E5135_RS05015 WP_135953137.1 1087724..1088236(-) (ssb) [Pasteurella multocida strain FCf45]
MAGVNKVIIVGYLGNEPEVRTMPNGEAVANISVATSESWIDKNTSEKRELTEWHRIVFYRRQAEIVGEYLRKGSKVYVEG
RLRTRKWQDQNGQDRYTTEIQGDVLQMLDSRPERYQAGQATQVGAAQQGRNQYAQQSQPAYQTPQTQTSASQPVPPPIPD
DGFDDDQIPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=356130 E5135_RS05015 WP_135953137.1 1087724..1088236(-) (ssb) [Pasteurella multocida strain FCf45]
ATGGCGGGCGTAAATAAAGTGATTATTGTTGGATACCTCGGTAATGAGCCTGAAGTGCGAACTATGCCAAATGGTGAGGC
TGTAGCCAATATTAGTGTCGCAACCAGTGAAAGTTGGATAGATAAGAATACAAGTGAAAAACGTGAATTAACCGAGTGGC
ATCGTATTGTGTTTTATCGTCGTCAAGCTGAGATTGTCGGAGAGTATTTACGCAAAGGCTCGAAAGTCTATGTTGAAGGT
CGTTTAAGAACGCGTAAATGGCAAGACCAAAATGGGCAAGACCGATACACCACAGAAATCCAAGGCGATGTACTTCAAAT
GTTAGATAGCCGTCCTGAGCGCTATCAAGCAGGGCAGGCAACGCAAGTTGGAGCGGCACAACAAGGTCGTAATCAATATG
CGCAACAGAGTCAGCCTGCCTACCAAACACCACAAACTCAAACTTCAGCATCTCAGCCTGTACCACCGCCTATCCCTGAT
GATGGCTTTGACGATGATCAGATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

61.749

100

0.665
  ssb Vibrio cholerae strain A1552

54.749

100

0.576
  ssb Neisseria meningitidis MC58

46.629

100

0.488
  ssb Neisseria gonorrhoeae MS11

46.552

100

0.476

Multiple sequence alignment