Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   E4Z98_RS07275 Genome accession   NZ_CP038865
Coordinates   1512556..1514313 (-) Length   585 a.a.
NCBI ID   WP_135254506.1    Uniprot ID   -
Organism   Vagococcus xieshaowenii strain CF-49     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1507556..1519313
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E4Z98_RS07265 (E4Z98_07265) - 1507843..1510521 (-) 2679 WP_135254508.1 cation-translocating P-type ATPase -
  E4Z98_RS07270 (E4Z98_07270) rcrQ 1510764..1512563 (-) 1800 WP_135254507.1 ABC transporter ATP-binding protein Regulator
  E4Z98_RS07275 (E4Z98_07275) rcrP 1512556..1514313 (-) 1758 WP_135254506.1 ABC transporter ATP-binding protein Regulator
  E4Z98_RS07280 (E4Z98_07280) - 1514457..1515132 (+) 676 Protein_1386 response regulator transcription factor -
  E4Z98_RS07285 (E4Z98_07285) - 1515129..1516172 (+) 1044 WP_135254504.1 HAMP domain-containing sensor histidine kinase -
  E4Z98_RS07290 (E4Z98_07290) - 1516280..1516996 (+) 717 WP_135961181.1 hypothetical protein -
  E4Z98_RS07295 (E4Z98_07295) - 1517029..1517346 (-) 318 WP_135254502.1 hypothetical protein -
  E4Z98_RS07300 (E4Z98_07300) - 1517401..1518090 (-) 690 WP_135254501.1 ABC transporter ATP-binding protein -
  E4Z98_RS07305 (E4Z98_07305) - 1518090..1519211 (-) 1122 WP_135254500.1 ABC transporter permease -

Sequence

Protein


Download         Length: 585 a.a.        Molecular weight: 65193.89 Da        Isoelectric Point: 5.1117

>NTDB_id=356052 E4Z98_RS07275 WP_135254506.1 1512556..1514313(-) (rcrP) [Vagococcus xieshaowenii strain CF-49]
MFKVLKKFKPAEYLIALISTLFIVVQVWLDLKLPDYMSEITMVMQTPGSKMSDLKEPGMYMVFCALGSLLSAVIVGYFAS
KLATNLAHRLRQEVFEKVNAFSMEEMQHFSIASLITRTTNDTSQVQMIIAMGMQVMIKAPIMAIWAITKIAGKNSEWSIA
TAVAVVVLLMLVGSIVVFALPKFKIIQTLTDNLNRVMREGLTGVRVVRAYNAEKYQEDKFEVANEDVTKTNLFVGRMMAL
MMPGMTLIMSGLSLSIYWIGAYIIDAAKEIPERMQLFSDMIVYSSYAMQVVMSFMMLVMIFIMLPRAMVSASRINEVLDT
KTKIIDGTLTQQPWEMGEVEFKHVDFQYPDAEEKVLEDISFTASPGETVAFIGSTGSGKSTLINLLARFYDVTSGEILIN
GKNIKEYKLEDLYNKIGYVSQKATIFSGTIESNVAFGDSQSTEPNSVEEALRTAKGLEFAENMEGGINAKIEQGGSNLSG
GQKQRLAIARAIHKNPEIFIFDDSFSALDYKTDKELRAELDSQRRGATTFIVAQRIGTIRNANKIIVLDEGKIVGMGTHD
DLMENCSVYQEIAYSQLSKEELTNG

Nucleotide


Download         Length: 1758 bp        

>NTDB_id=356052 E4Z98_RS07275 WP_135254506.1 1512556..1514313(-) (rcrP) [Vagococcus xieshaowenii strain CF-49]
ATGTTTAAAGTATTAAAAAAATTTAAACCCGCTGAATATTTAATTGCCTTGATCTCGACATTATTTATTGTCGTACAAGT
TTGGTTAGATTTGAAGCTCCCTGACTATATGTCAGAAATTACTATGGTGATGCAAACACCAGGAAGTAAAATGTCAGACC
TTAAAGAACCAGGAATGTACATGGTTTTTTGTGCGTTAGGTAGTTTATTATCAGCAGTCATTGTTGGTTATTTTGCTTCT
AAATTAGCCACAAACTTGGCACATCGTCTTCGTCAAGAAGTATTTGAAAAGGTTAATGCCTTCTCAATGGAAGAAATGCA
ACATTTTTCAATTGCTAGTTTAATTACTCGTACAACCAATGATACAAGTCAAGTGCAAATGATTATTGCAATGGGGATGC
AAGTGATGATCAAAGCACCAATTATGGCCATCTGGGCAATTACTAAAATTGCTGGGAAAAACAGTGAATGGTCGATTGCA
ACGGCAGTAGCTGTTGTTGTTTTATTAATGTTGGTAGGAAGCATTGTCGTATTTGCTTTACCAAAATTCAAAATTATCCA
AACATTAACGGATAATCTTAACCGTGTTATGCGTGAAGGGTTAACCGGAGTACGCGTAGTACGTGCTTACAATGCTGAAA
AGTACCAAGAAGATAAGTTTGAAGTTGCTAATGAAGATGTTACAAAGACTAACTTATTTGTTGGTCGTATGATGGCCTTA
ATGATGCCAGGAATGACCTTGATCATGAGTGGTTTGTCTTTATCCATTTATTGGATTGGTGCCTACATTATTGATGCTGC
AAAAGAAATTCCAGAAAGAATGCAATTATTCTCAGATATGATTGTGTATTCTTCTTATGCCATGCAAGTGGTGATGTCGT
TTATGATGTTGGTAATGATTTTTATTATGTTACCAAGAGCGATGGTATCTGCTAGTCGTATCAATGAAGTATTAGATACA
AAAACTAAAATTATTGACGGTACGTTGACACAACAACCTTGGGAAATGGGCGAAGTAGAATTTAAACATGTAGACTTCCA
ATACCCAGATGCTGAAGAAAAAGTATTAGAAGATATTTCCTTTACTGCTTCACCAGGTGAAACAGTGGCCTTTATTGGTT
CAACCGGTTCAGGTAAGAGTACATTGATTAACTTATTGGCACGTTTTTATGATGTGACATCAGGTGAAATTTTAATCAAT
GGAAAAAATATCAAAGAATATAAATTAGAAGATTTATACAATAAAATCGGTTATGTTTCTCAAAAAGCAACTATTTTCTC
AGGAACTATTGAATCAAACGTTGCGTTTGGTGATAGTCAGTCAACTGAACCAAATAGTGTTGAAGAAGCTTTACGTACAG
CAAAAGGGTTAGAATTTGCTGAAAATATGGAGGGCGGAATTAACGCGAAGATTGAACAAGGTGGTTCTAACCTGTCAGGT
GGACAAAAACAACGTTTAGCGATTGCTAGAGCGATTCATAAAAACCCTGAAATCTTTATTTTTGATGATTCTTTCTCAGC
GCTAGATTATAAAACTGATAAAGAATTAAGAGCAGAGTTAGATTCACAACGACGTGGTGCAACAACATTTATCGTGGCAC
AACGTATTGGAACTATTCGTAACGCTAACAAAATCATTGTATTAGATGAAGGTAAAATCGTTGGTATGGGAACACATGAT
GACTTGATGGAAAATTGTTCTGTATATCAAGAAATAGCCTACTCACAATTATCGAAGGAGGAATTAACTAATGGCTAG

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(356-504)

ABC transporter transmembrane region (ABC_membrane)

(17-293)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

52.588

100

0.538

Multiple sequence alignment