Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   E4Z98_RS07270 Genome accession   NZ_CP038865
Coordinates   1510764..1512563 (-) Length   599 a.a.
NCBI ID   WP_135254507.1    Uniprot ID   A0AAJ5EEB6
Organism   Vagococcus xieshaowenii strain CF-49     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1505764..1517563
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E4Z98_RS07260 (E4Z98_07260) asnB 1505803..1507710 (+) 1908 WP_135254509.1 asparagine synthase (glutamine-hydrolyzing) -
  E4Z98_RS07265 (E4Z98_07265) - 1507843..1510521 (-) 2679 WP_135254508.1 cation-translocating P-type ATPase -
  E4Z98_RS07270 (E4Z98_07270) rcrQ 1510764..1512563 (-) 1800 WP_135254507.1 ABC transporter ATP-binding protein Regulator
  E4Z98_RS07275 (E4Z98_07275) rcrP 1512556..1514313 (-) 1758 WP_135254506.1 ABC transporter ATP-binding protein Regulator
  E4Z98_RS07280 (E4Z98_07280) - 1514457..1515132 (+) 676 Protein_1386 response regulator transcription factor -
  E4Z98_RS07285 (E4Z98_07285) - 1515129..1516172 (+) 1044 WP_135254504.1 HAMP domain-containing sensor histidine kinase -
  E4Z98_RS07290 (E4Z98_07290) - 1516280..1516996 (+) 717 WP_135961181.1 hypothetical protein -
  E4Z98_RS07295 (E4Z98_07295) - 1517029..1517346 (-) 318 WP_135254502.1 hypothetical protein -

Sequence

Protein


Download         Length: 599 a.a.        Molecular weight: 66130.37 Da        Isoelectric Point: 4.8712

>NTDB_id=356051 E4Z98_RS07270 WP_135254507.1 1510764..1512563(-) (rcrQ) [Vagococcus xieshaowenii strain CF-49]
MARPMHGGGRPAEKIDASFSDTWGKLIDYCKQYMPAIAVALIAAVGGAILTLIGPNKLSELTDIITKGMMSDIDLGSVKN
IAMTLLMIYVASVVLSYLQGFIMTTITQRVSKKMRGDIAGKINRLPLKYLDQTSYGDTLSRVTNDVDTISQTLNQGIGSL
VAAIAQFLGAIVMMYYTDWRMATVGILASLVGFVFMITIISKSQGYFAKQQNLLGELNGQIEENYNGHTNIKAYNAQPEF
IKAFTGVNDKLRNSAQMAQFLSGLMMPLMGFIGNIGYVAVCVMGAKLVIDGKITIGVIVAFMLYIRLFTQPLSNIAQSMT
SLQSTGAASYRVFNLLEETEMRDEDHLIQQLDNVKGDVTFDHVSFGYDEDKMIIKDFSANVHAGQKIAIVGPTGAGKSTL
VNLLMKFYEVNEGEITIDGHPVSTLSRKAIHDAFCMVLQDTWMFEGTIRENLIYSEEGVTEEHMQEVCKAVGVEHFIKTL
SKGYDTVLDDNTSLSAGQKQLVTIARAMLKDSPMLILDEATSSVDTRTEILIQQAMDKLMEGRTSFVIAHRLSTIKDADL
ILVMKDGQIIEQGNHDELIEQKGFYEELYNSQFTETEMD

Nucleotide


Download         Length: 1800 bp        

>NTDB_id=356051 E4Z98_RS07270 WP_135254507.1 1510764..1512563(-) (rcrQ) [Vagococcus xieshaowenii strain CF-49]
ATGGCTAGACCAATGCATGGTGGCGGCAGACCCGCTGAAAAAATAGACGCTAGTTTCTCCGATACGTGGGGAAAACTAAT
TGATTACTGTAAACAATACATGCCAGCTATTGCAGTGGCATTAATTGCAGCAGTAGGTGGTGCGATTTTAACCTTAATCG
GGCCCAATAAATTAAGTGAATTAACGGACATTATTACTAAAGGTATGATGTCAGATATAGACTTAGGTAGTGTAAAAAAT
ATTGCGATGACCTTGTTAATGATTTATGTGGCAAGTGTCGTATTATCATATTTACAAGGGTTTATCATGACAACGATCAC
GCAACGTGTTTCTAAGAAGATGCGTGGTGATATCGCAGGTAAAATTAATCGTTTACCCTTGAAGTATTTAGATCAAACAA
GTTACGGTGACACACTATCTCGTGTAACCAATGACGTTGATACTATTTCTCAAACATTAAACCAAGGGATCGGCTCGTTA
GTTGCGGCAATTGCACAGTTTTTAGGTGCTATTGTGATGATGTATTATACTGATTGGAGAATGGCAACGGTTGGTATCTT
AGCGTCATTAGTTGGATTTGTTTTCATGATCACGATTATTTCTAAATCACAAGGGTATTTTGCTAAACAACAAAATTTAT
TAGGTGAATTAAATGGTCAAATTGAAGAGAATTACAACGGACATACTAATATCAAAGCTTATAACGCTCAACCAGAATTT
ATTAAAGCTTTTACTGGAGTGAATGACAAATTACGTAACTCAGCTCAAATGGCTCAATTTTTATCAGGGTTAATGATGCC
TTTAATGGGATTCATTGGTAATATTGGCTACGTTGCTGTCTGTGTAATGGGAGCTAAATTAGTGATTGATGGTAAAATTA
CTATTGGGGTAATCGTAGCGTTCATGTTATATATTCGCTTGTTTACACAACCATTATCAAATATTGCCCAATCAATGACG
AGTTTACAGTCAACAGGAGCGGCAAGTTATCGTGTGTTTAATTTACTAGAAGAAACAGAGATGAGAGATGAAGATCACTT
AATTCAACAATTGGATAATGTTAAAGGTGATGTAACCTTTGATCATGTTTCATTTGGATATGATGAAGACAAGATGATTA
TTAAAGACTTCTCAGCCAACGTTCATGCAGGTCAAAAAATCGCGATTGTAGGACCAACAGGTGCTGGTAAATCAACGTTA
GTTAACTTGTTAATGAAGTTCTATGAAGTGAATGAAGGTGAAATTACTATCGATGGTCACCCAGTGTCAACGTTATCTCG
TAAAGCCATTCATGATGCATTTTGTATGGTGTTACAAGATACATGGATGTTTGAAGGGACTATTCGTGAGAATTTGATTT
ACTCAGAAGAAGGCGTAACAGAAGAACATATGCAAGAAGTGTGTAAAGCTGTTGGGGTGGAACACTTTATTAAAACATTA
TCAAAAGGCTATGATACGGTACTGGATGACAATACGTCATTATCAGCTGGTCAAAAACAATTAGTCACAATTGCACGTGC
GATGTTGAAAGATTCACCAATGCTAATCTTGGATGAAGCAACTAGTTCAGTTGATACACGTACTGAAATTTTAATTCAAC
AAGCAATGGATAAATTGATGGAGGGCCGTACGTCCTTTGTAATCGCTCATAGATTATCAACAATTAAAGATGCTGACTTG
ATTTTAGTGATGAAAGATGGTCAAATTATCGAACAAGGTAATCATGATGAATTGATTGAACAAAAAGGATTCTATGAAGA
ATTATACAACAGTCAATTTACTGAAACAGAAATGGACTAG

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(39-312)

ABC transporter (ABC_tran)

(375-522)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

57.443

95.326

0.548

Multiple sequence alignment