Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | SaO82_RS01970 | Genome accession | NZ_CP038819 |
| Coordinates | 418197..418700 (+) | Length | 167 a.a. |
| NCBI ID | WP_000934799.1 | Uniprot ID | A0A7U7IE99 |
| Organism | Staphylococcus aureus strain O82 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 418197..436396 | 418197..418700 | within | 0 |
Gene organization within MGE regions
Location: 418197..436396
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SaO82_RS01970 (SaO82_0373) | ssbA | 418197..418700 (+) | 504 | WP_000934799.1 | single-stranded DNA-binding protein | Machinery gene |
| SaO82_RS01975 (SaO82_0374) | rpsR | 418752..418994 (+) | 243 | WP_000897044.1 | 30S ribosomal protein S18 | - |
| SaO82_RS01980 (SaO82_0375) | - | 419235..420464 (-) | 1230 | WP_136142516.1 | site-specific integrase | - |
| SaO82_RS01985 (SaO82_0376) | - | 420920..421615 (-) | 696 | WP_000668212.1 | helix-turn-helix domain-containing protein | - |
| SaO82_RS01990 (SaO82_0377) | - | 421759..421971 (+) | 213 | WP_136142517.1 | helix-turn-helix transcriptional regulator | - |
| SaO82_RS01995 (SaO82_0378) | - | 421972..422244 (+) | 273 | WP_000091734.1 | helix-turn-helix domain-containing protein | - |
| SaO82_RS02000 (SaO82_0379) | - | 422256..422402 (+) | 147 | WP_031824147.1 | hypothetical protein | - |
| SaO82_RS02005 (SaO82_0380) | - | 422395..422604 (+) | 210 | WP_001058493.1 | hypothetical protein | - |
| SaO82_RS02010 (SaO82_0381) | - | 422607..422933 (+) | 327 | WP_136142518.1 | DUF1474 family protein | - |
| SaO82_RS02015 (SaO82_0382) | - | 422998..423867 (+) | 870 | WP_001002726.1 | primase alpha helix C-terminal domain-containing protein | - |
| SaO82_RS02020 (SaO82_0383) | - | 423881..425590 (+) | 1710 | WP_000447458.1 | DUF927 domain-containing protein | - |
| SaO82_RS02025 (SaO82_0384) | - | 425902..426282 (+) | 381 | WP_000356937.1 | hypothetical protein | - |
| SaO82_RS02030 (SaO82_0385) | - | 426279..426920 (+) | 642 | WP_001019787.1 | hypothetical protein | - |
| SaO82_RS02035 (SaO82_0386) | - | 427267..427608 (+) | 342 | WP_001190600.1 | hypothetical protein | - |
| SaO82_RS02040 (SaO82_0387) | - | 427620..428198 (+) | 579 | WP_000846276.1 | hypothetical protein | - |
| SaO82_RS02045 (SaO82_0388) | - | 428216..428434 (+) | 219 | WP_000853271.1 | capsid morphogenesis B protein | - |
| SaO82_RS02050 (SaO82_0389) | - | 428485..429012 (+) | 528 | WP_000765272.1 | spore coat protein | - |
| SaO82_RS02055 | - | 429144..429356 (+) | 213 | WP_078064908.1 | pathogenicity island family protein | - |
| SaO82_RS02060 (SaO82_0391) | - | 429353..429922 (+) | 570 | WP_043039651.1 | terminase small subunit | - |
| SaO82_RS02065 (SaO82_0392) | - | 430029..430379 (+) | 351 | WP_000768417.1 | complement inhibitor SCIN family protein | - |
| SaO82_RS02070 (SaO82_0393) | vwb | 430638..432137 (+) | 1500 | WP_000731021.1 | von Willebrand factor binding protein Vwb | - |
| SaO82_RS14100 | - | 432449..432730 (+) | 282 | WP_025174648.1 | hypothetical protein | - |
| SaO82_RS02080 (SaO82_0395) | - | 432849..433361 (+) | 513 | WP_000813314.1 | hypothetical protein | - |
| SaO82_RS14105 | - | 433377..433556 (+) | 180 | WP_000797954.1 | hypothetical protein | - |
| SaO82_RS02095 (SaO82_0396) | - | 434024..434749 (+) | 726 | WP_000166620.1 | CPBP family intramembrane glutamic endopeptidase | - |
| SaO82_RS02100 (SaO82_0397) | - | 435389..436396 (-) | 1008 | WP_001080631.1 | Abi family protein | - |
Sequence
Protein
Download Length: 167 a.a. Molecular weight: 18539.12 Da Isoelectric Point: 4.7305
>NTDB_id=355789 SaO82_RS01970 WP_000934799.1 418197..418700(+) (ssbA) [Staphylococcus aureus strain O82]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF
Nucleotide
Download Length: 504 bp
>NTDB_id=355789 SaO82_RS01970 WP_000934799.1 418197..418700(+) (ssbA) [Staphylococcus aureus strain O82]
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCGCAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCGCAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
65.341 |
100 |
0.689 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
54.971 |
100 |
0.563 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
58.491 |
63.473 |
0.371 |
| ssb | Glaesserella parasuis strain SC1401 |
34.463 |
100 |
0.365 |