Detailed information
Bioinformatically predicted
Overview
| Name | comEA/comE1 | Type | Machinery gene |
| Locus tag | E5Q53_RS06425 | Genome accession | NZ_CP038817 |
| Coordinates | 1333019..1333387 (-) | Length | 122 a.a. |
| NCBI ID | WP_005707401.1 | Uniprot ID | - |
| Organism | Haemophilus parahaemolyticus strain NEB129 | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1328019..1338387
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| E5Q53_RS06390 (E5Q53_06385) | - | 1329311..1329577 (+) | 267 | Protein_1214 | IS3 family transposase | - |
| E5Q53_RS06395 (E5Q53_06390) | - | 1329596..1330231 (-) | 636 | WP_244289119.1 | FkbM family methyltransferase | - |
| E5Q53_RS06400 (E5Q53_06395) | - | 1330218..1330433 (-) | 216 | WP_039863416.1 | hypothetical protein | - |
| E5Q53_RS06405 (E5Q53_06400) | - | 1330711..1330992 (+) | 282 | WP_115364327.1 | helix-turn-helix domain-containing protein | - |
| E5Q53_RS10370 | - | 1331169..1331558 (+) | 390 | WP_232610061.1 | hypothetical protein | - |
| E5Q53_RS06420 (E5Q53_06415) | asd | 1331965..1332855 (-) | 891 | WP_005707403.1 | archaetidylserine decarboxylase | - |
| E5Q53_RS06425 (E5Q53_06420) | comEA/comE1 | 1333019..1333387 (-) | 369 | WP_005707401.1 | helix-hairpin-helix domain-containing protein | Machinery gene |
| E5Q53_RS06430 (E5Q53_06425) | - | 1333652..1335001 (+) | 1350 | WP_005707399.1 | LysM-like peptidoglycan-binding domain-containing protein | - |
| E5Q53_RS06435 (E5Q53_06430) | - | 1335057..1335470 (+) | 414 | WP_005707396.1 | MliC family protein | - |
| E5Q53_RS06440 (E5Q53_06435) | waaF | 1335504..1336547 (+) | 1044 | WP_005707402.1 | lipopolysaccharide heptosyltransferase II | - |
| E5Q53_RS06445 (E5Q53_06440) | rfaC | 1336547..1337500 (+) | 954 | WP_005707407.1 | lipopolysaccharide heptosyltransferase RfaC | - |
| E5Q53_RS06450 (E5Q53_06445) | - | 1337570..1337884 (-) | 315 | WP_005707395.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 122 a.a. Molecular weight: 12782.67 Da Isoelectric Point: 10.1490
>NTDB_id=355775 E5Q53_RS06425 WP_005707401.1 1333019..1333387(-) (comEA/comE1) [Haemophilus parahaemolyticus strain NEB129]
MKKINTFAISLIVGLFSTAVFANEVTTQPTTLSTQPPVVTAPATSTAPVNIQQVTADPNSVNINTASAAEIQDKLVGIGG
KKAQAIVDYRTKNGAFLSIEQLKEVSGIGAATLEKNRSRIVL
MKKINTFAISLIVGLFSTAVFANEVTTQPTTLSTQPPVVTAPATSTAPVNIQQVTADPNSVNINTASAAEIQDKLVGIGG
KKAQAIVDYRTKNGAFLSIEQLKEVSGIGAATLEKNRSRIVL
Nucleotide
Download Length: 369 bp
>NTDB_id=355775 E5Q53_RS06425 WP_005707401.1 1333019..1333387(-) (comEA/comE1) [Haemophilus parahaemolyticus strain NEB129]
ATGAAAAAAATCAACACATTTGCAATATCGCTTATCGTTGGCTTATTCTCAACCGCAGTATTTGCCAATGAAGTTACAAC
CCAACCAACAACGCTATCTACACAACCCCCCGTTGTAACTGCACCAGCAACCTCTACAGCACCTGTTAATATTCAGCAGG
TTACTGCAGATCCAAACTCTGTAAACATTAACACTGCGTCAGCCGCAGAAATTCAAGACAAACTCGTTGGGATTGGCGGG
AAAAAAGCCCAAGCTATTGTGGATTATCGTACCAAAAATGGTGCATTCCTAAGTATTGAGCAATTAAAAGAAGTATCTGG
TATTGGAGCGGCGACACTTGAGAAAAACCGCTCACGTATTGTTTTATAA
ATGAAAAAAATCAACACATTTGCAATATCGCTTATCGTTGGCTTATTCTCAACCGCAGTATTTGCCAATGAAGTTACAAC
CCAACCAACAACGCTATCTACACAACCCCCCGTTGTAACTGCACCAGCAACCTCTACAGCACCTGTTAATATTCAGCAGG
TTACTGCAGATCCAAACTCTGTAAACATTAACACTGCGTCAGCCGCAGAAATTCAAGACAAACTCGTTGGGATTGGCGGG
AAAAAAGCCCAAGCTATTGTGGATTATCGTACCAAAAATGGTGCATTCCTAAGTATTGAGCAATTAAAAGAAGTATCTGG
TATTGGAGCGGCGACACTTGAGAAAAACCGCTCACGTATTGTTTTATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comEA/comE1 | Glaesserella parasuis strain SC1401 |
57.377 |
100 |
0.574 |
| comE1/comEA | Haemophilus influenzae Rd KW20 |
47.541 |
100 |
0.475 |
| comEA | Acinetobacter baylyi ADP1 |
36.22 |
100 |
0.377 |