Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   KAN01_RS01670 Genome accession   NZ_CP038816
Coordinates   350347..351162 (+) Length   271 a.a.
NCBI ID   WP_004711686.1    Uniprot ID   A0A836Z055
Organism   Acinetobacter nosocomialis strain KAN01     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 345347..356162
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KAN01_RS01635 (KAN01_01635) - 345933..346064 (-) 132 WP_102990545.1 hypothetical protein -
  KAN01_RS01640 (KAN01_01640) rpoZ 346103..346381 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  KAN01_RS01645 (KAN01_01645) gmk 346454..347083 (-) 630 WP_016803891.1 guanylate kinase -
  KAN01_RS01650 (KAN01_01650) ispH 347206..348156 (+) 951 WP_002051768.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  KAN01_RS01655 (KAN01_01655) fimU 348325..348798 (+) 474 WP_016803890.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  KAN01_RS01660 (KAN01_01660) pilV 348792..349352 (+) 561 WP_079377028.1 type IV pilus modification protein PilV Machinery gene
  KAN01_RS01665 (KAN01_01665) pilW 349352..350350 (+) 999 WP_032011724.1 PilW family protein Machinery gene
  KAN01_RS01670 (KAN01_01670) pilX 350347..351162 (+) 816 WP_004711686.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  KAN01_RS01675 (KAN01_01675) - 352377..355346 (+) 2970 Protein_318 PilC/PilY family type IV pilus protein -
  KAN01_RS01680 (KAN01_01680) pilY2 355359..355841 (+) 483 WP_004884685.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 271 a.a.        Molecular weight: 28881.67 Da        Isoelectric Point: 6.6293

>NTDB_id=355725 KAN01_RS01670 WP_004711686.1 350347..351162(+) (pilX) [Acinetobacter nosocomialis strain KAN01]
MTHLRSKYIVQHHQKGATLIVVLIILLIVIAVGVLAIRVAIVSLKVATNSQIGQLNFQSSDTPIQLITQMDPTTLTNISN
VLGAALKENESHPGSEYNFCYKPVSTTVSFAQTRDASLLRAGTANNAVVEDGGVAGFCDLTTDYGSNRQAVVTQIAVSIP
TDAVNDVPGSNLPRGTNASEGTALPKSMLSTQRIRVISTSFLPAYASTSMQTLQADCLSTNSAKISDNFDSSLSNKQTLA
DCLANHNVPFSTQIQEFNYTNKLTETMAPGS

Nucleotide


Download         Length: 816 bp        

>NTDB_id=355725 KAN01_RS01670 WP_004711686.1 350347..351162(+) (pilX) [Acinetobacter nosocomialis strain KAN01]
ATGACCCATTTGAGAAGCAAATATATAGTCCAACATCATCAAAAAGGTGCGACGCTTATTGTTGTGCTTATTATTTTGTT
AATTGTTATTGCTGTGGGGGTTTTAGCCATTAGGGTGGCTATTGTTTCTTTGAAAGTTGCAACAAATAGCCAAATTGGCC
AATTAAATTTTCAATCTTCTGATACTCCTATACAGCTCATCACCCAGATGGATCCAACGACGCTTACAAATATTAGTAAT
GTGTTAGGAGCAGCACTTAAAGAAAATGAGAGTCATCCTGGATCGGAATATAATTTTTGCTATAAGCCAGTTTCGACCAC
TGTAAGTTTTGCCCAAACCCGAGATGCGAGTCTACTGCGAGCAGGAACTGCTAACAATGCCGTGGTAGAGGATGGAGGAG
TGGCTGGCTTTTGTGACCTGACCACTGATTATGGAAGTAATCGTCAAGCTGTCGTTACACAAATTGCTGTAAGCATTCCA
ACAGATGCCGTTAATGATGTTCCAGGTTCAAATTTACCACGCGGAACAAATGCGTCTGAAGGTACTGCTTTACCAAAGAG
TATGCTTTCTACACAACGCATTCGAGTGATTTCAACTTCTTTTTTACCTGCTTATGCTTCTACCTCAATGCAAACTTTGC
AAGCAGATTGTTTGAGTACAAATAGTGCCAAGATCAGCGATAACTTTGATAGCTCATTAAGTAATAAACAAACGTTAGCT
GATTGTTTGGCAAATCATAACGTACCTTTTAGTACTCAGATTCAAGAATTTAACTATACCAATAAACTTACTGAAACTAT
GGCGCCAGGTTCATAA

Domains

Predicted by InterproScan.

PilX N-terminal (PilX_N)

(15-59)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A836Z055

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

82.353

100

0.827

Multiple sequence alignment