Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilW   Type   Machinery gene
Locus tag   KAN01_RS01665 Genome accession   NZ_CP038816
Coordinates   349352..350350 (+) Length   332 a.a.
NCBI ID   WP_032011724.1    Uniprot ID   -
Organism   Acinetobacter nosocomialis strain KAN01     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 344352..355350
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KAN01_RS01635 (KAN01_01635) - 345933..346064 (-) 132 WP_102990545.1 hypothetical protein -
  KAN01_RS01640 (KAN01_01640) rpoZ 346103..346381 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  KAN01_RS01645 (KAN01_01645) gmk 346454..347083 (-) 630 WP_016803891.1 guanylate kinase -
  KAN01_RS01650 (KAN01_01650) ispH 347206..348156 (+) 951 WP_002051768.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  KAN01_RS01655 (KAN01_01655) fimU 348325..348798 (+) 474 WP_016803890.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  KAN01_RS01660 (KAN01_01660) pilV 348792..349352 (+) 561 WP_079377028.1 type IV pilus modification protein PilV Machinery gene
  KAN01_RS01665 (KAN01_01665) pilW 349352..350350 (+) 999 WP_032011724.1 PilW family protein Machinery gene
  KAN01_RS01670 (KAN01_01670) pilX 350347..351162 (+) 816 WP_004711686.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  KAN01_RS01675 (KAN01_01675) - 352377..355346 (+) 2970 Protein_318 PilC/PilY family type IV pilus protein -

Sequence

Protein


Download         Length: 332 a.a.        Molecular weight: 35799.33 Da        Isoelectric Point: 6.2394

>NTDB_id=355724 KAN01_RS01665 WP_032011724.1 349352..350350(+) (pilW) [Acinetobacter nosocomialis strain KAN01]
MNRSFLEKQQGFTLIELMVALALGLILVAAATQLFIGGILSSRLQKANAEIQDSGIFGLDYIVRDIRLVNYGNIINPQLN
DTTPWGGIVLTGSTATNNNNVNFVPNTGTNAYIADALLSRGAGDTVSTLNNQWKGLSNIQNSSNATIQSDQLTIQFIAPS
NMTNCEGVNVLAGDLVVERYFLRLDNNGSSQQDYALACDANTPSTTPTAQPTSVDGFGDAGQIILPRIDHFHVLLGAKNA
AGNFAYYTIPQYRVAAQAARDATPTQLAPRILSIQISVLARSTNNAQNKAVDPNQTFVMLDQTVHASDTSTRFLRRVYST
TIALRNAMGEKL

Nucleotide


Download         Length: 999 bp        

>NTDB_id=355724 KAN01_RS01665 WP_032011724.1 349352..350350(+) (pilW) [Acinetobacter nosocomialis strain KAN01]
ATGAATCGATCATTTTTAGAAAAGCAGCAAGGATTTACCTTAATTGAACTTATGGTTGCTTTGGCTTTAGGTTTAATTCT
TGTTGCAGCTGCTACTCAATTGTTTATAGGTGGAATTTTATCAAGTCGTCTACAAAAAGCGAATGCTGAAATACAAGATA
GTGGTATTTTTGGTCTGGATTATATTGTACGTGACATACGACTTGTCAATTATGGAAATATTATAAATCCTCAGTTAAAT
GATACTACTCCTTGGGGAGGGATAGTGTTAACGGGTTCTACTGCTACCAATAATAACAATGTAAATTTTGTGCCTAATAC
GGGGACTAACGCCTATATCGCAGATGCTTTATTAAGCCGTGGTGCAGGCGATACAGTAAGTACCTTAAATAACCAGTGGA
AAGGCCTTTCAAATATACAGAACAGTTCAAATGCAACTATACAGAGTGATCAGCTTACTATTCAATTTATTGCTCCTTCT
AATATGACAAATTGTGAAGGTGTAAATGTTTTGGCGGGTGATCTTGTTGTAGAGCGCTATTTTTTACGTCTCGATAATAA
TGGGAGTTCACAACAAGATTATGCCCTAGCATGTGATGCAAATACACCTTCTACCACACCTACAGCTCAACCAACATCAG
TTGATGGGTTTGGAGATGCGGGTCAAATTATATTGCCACGTATTGATCATTTTCATGTTCTATTAGGCGCGAAAAATGCA
GCTGGTAATTTTGCTTATTACACTATTCCTCAATATCGAGTGGCTGCACAAGCTGCAAGAGATGCGACCCCTACACAATT
AGCTCCACGTATCTTATCCATACAAATTTCTGTATTAGCGCGTTCTACCAATAATGCTCAAAACAAAGCAGTCGATCCTA
ATCAAACTTTTGTAATGTTAGATCAAACAGTACATGCCTCAGATACAAGTACACGATTCTTGCGACGCGTTTATAGCACA
ACAATTGCTTTACGTAATGCAATGGGGGAAAAACTATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)

Type IV Pilus-assembly protein W (PilW)

(180-326)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilW Acinetobacter baumannii D1279779

83.784

100

0.84
  comB Acinetobacter baylyi ADP1

34.682

100

0.361

Multiple sequence alignment