Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | E5Z44_RS04260 | Genome accession | NZ_CP038807 |
| Coordinates | 936209..936718 (+) | Length | 169 a.a. |
| NCBI ID | WP_002461102.1 | Uniprot ID | A0A133Q7N8 |
| Organism | Staphylococcus lugdunensis strain APC 3758 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 934788..947473 | 936209..936718 | within | 0 |
Gene organization within MGE regions
Location: 934788..947473
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| E5Z44_RS04250 (E5Z44_04320) | - | 934788..935573 (-) | 786 | WP_002461100.1 | GH25 family lysozyme | - |
| E5Z44_RS04255 (E5Z44_04325) | rpsF | 935891..936187 (+) | 297 | WP_002461101.1 | 30S ribosomal protein S6 | - |
| E5Z44_RS04260 (E5Z44_04330) | ssbA | 936209..936718 (+) | 510 | WP_002461102.1 | single-stranded DNA-binding protein | Machinery gene |
| E5Z44_RS04265 (E5Z44_04335) | rpsR | 936765..937007 (+) | 243 | WP_002461103.1 | 30S ribosomal protein S18 | - |
| E5Z44_RS04270 (E5Z44_04340) | - | 937153..938373 (-) | 1221 | WP_002492008.1 | tyrosine-type recombinase/integrase | - |
| E5Z44_RS04275 (E5Z44_04345) | - | 938410..939102 (-) | 693 | WP_002459649.1 | hypothetical protein | - |
| E5Z44_RS04280 (E5Z44_04350) | - | 939129..939701 (-) | 573 | WP_002459648.1 | helix-turn-helix domain-containing protein | - |
| E5Z44_RS04285 (E5Z44_04355) | - | 939873..940094 (+) | 222 | WP_161510799.1 | helix-turn-helix transcriptional regulator | - |
| E5Z44_RS04290 (E5Z44_04360) | - | 940095..940367 (+) | 273 | WP_002492070.1 | helix-turn-helix domain-containing protein | - |
| E5Z44_RS12310 | - | 940384..940542 (+) | 159 | WP_002492040.1 | hypothetical protein | - |
| E5Z44_RS04295 (E5Z44_04365) | - | 940532..940951 (+) | 420 | WP_002492019.1 | hypothetical protein | - |
| E5Z44_RS04300 (E5Z44_04370) | tscT | 940951..941253 (+) | 303 | WP_002492064.1 | type II toxin-antitoxin system toxin TscT | - |
| E5Z44_RS04305 (E5Z44_04375) | - | 941347..942216 (+) | 870 | WP_002492075.1 | primase alpha helix C-terminal domain-containing protein | - |
| E5Z44_RS04310 (E5Z44_04380) | - | 942230..943939 (+) | 1710 | WP_002492057.1 | DUF927 domain-containing protein | - |
| E5Z44_RS04315 (E5Z44_04385) | - | 944264..944785 (+) | 522 | WP_002492062.1 | hypothetical protein | - |
| E5Z44_RS04320 (E5Z44_04390) | - | 944787..945428 (+) | 642 | WP_002492071.1 | pathogenicity island protein | - |
| E5Z44_RS04325 (E5Z44_04395) | - | 945714..946058 (+) | 345 | WP_002445374.1 | hypothetical protein | - |
| E5Z44_RS04330 (E5Z44_04400) | - | 946072..946305 (+) | 234 | WP_002492317.1 | hypothetical protein | - |
| E5Z44_RS04335 (E5Z44_04405) | - | 946317..946838 (+) | 522 | WP_002445376.1 | coiled-coil domain-containing protein | - |
| E5Z44_RS04340 (E5Z44_04410) | - | 946901..947473 (+) | 573 | WP_002445377.1 | terminase small subunit | - |
Sequence
Protein
Download Length: 169 a.a. Molecular weight: 18747.34 Da Isoelectric Point: 4.9366
>NTDB_id=355533 E5Z44_RS04260 WP_002461102.1 936209..936718(+) (ssbA) [Staphylococcus lugdunensis strain APC 3758]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQAENVNNYLNKGSLAGVDGRLQSR
SYENQEGRRIFVTEVVCDSVQFLEPKNAQHGGQRSQNNEFQDYGQGFGGQQSGQNTSYNNNNASKSNQNDNPFANANGPI
DISDDDLPF
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQAENVNNYLNKGSLAGVDGRLQSR
SYENQEGRRIFVTEVVCDSVQFLEPKNAQHGGQRSQNNEFQDYGQGFGGQQSGQNTSYNNNNASKSNQNDNPFANANGPI
DISDDDLPF
Nucleotide
Download Length: 510 bp
>NTDB_id=355533 E5Z44_RS04260 WP_002461102.1 936209..936718(+) (ssbA) [Staphylococcus lugdunensis strain APC 3758]
ATGTTAAATAGAGTTGTATTAGTAGGTCGTTTAACCAAAGATCCAGAATACAGAACTACTCCCTCAGGCGTAAGTGTAGC
GACTTTTACTTTAGCTGTTAATCGTACATTCACGAATGCTCAAGGGGAACGCGAAGCTGACTTTATCAACTGTGTTGTTT
TTAGAAGACAAGCAGAAAACGTTAATAACTATTTAAATAAAGGTAGTTTAGCCGGCGTTGATGGTCGCTTACAATCACGT
AGTTATGAAAATCAAGAAGGTCGTCGTATTTTTGTTACCGAAGTTGTATGCGACAGTGTTCAATTCCTTGAACCTAAGAA
CGCACAACATGGTGGCCAACGTTCACAAAACAATGAATTCCAAGACTATGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAATACGTCATATAATAACAATAACGCATCAAAATCTAATCAAAACGATAATCCATTTGCCAATGCTAATGGACCGATT
GATATTAGTGATGATGACTTACCATTCTAA
ATGTTAAATAGAGTTGTATTAGTAGGTCGTTTAACCAAAGATCCAGAATACAGAACTACTCCCTCAGGCGTAAGTGTAGC
GACTTTTACTTTAGCTGTTAATCGTACATTCACGAATGCTCAAGGGGAACGCGAAGCTGACTTTATCAACTGTGTTGTTT
TTAGAAGACAAGCAGAAAACGTTAATAACTATTTAAATAAAGGTAGTTTAGCCGGCGTTGATGGTCGCTTACAATCACGT
AGTTATGAAAATCAAGAAGGTCGTCGTATTTTTGTTACCGAAGTTGTATGCGACAGTGTTCAATTCCTTGAACCTAAGAA
CGCACAACATGGTGGCCAACGTTCACAAAACAATGAATTCCAAGACTATGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAATACGTCATATAATAACAATAACGCATCAAAATCTAATCAAAACGATAATCCATTTGCCAATGCTAATGGACCGATT
GATATTAGTGATGATGACTTACCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
65.896 |
100 |
0.675 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
54.651 |
100 |
0.556 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
59.434 |
62.722 |
0.373 |
| ssb | Glaesserella parasuis strain SC1401 |
34.463 |
100 |
0.361 |