Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   E4179_RS21030 Genome accession   NZ_CP038658
Coordinates   4258242..4258766 (-) Length   174 a.a.
NCBI ID   WP_003031723.1    Uniprot ID   -
Organism   Citrobacter freundii strain 680     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4253242..4263766
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E4179_RS21020 (E4179_21570) - 4255085..4255366 (+) 282 WP_003031727.1 YjcB family protein -
  E4179_RS21025 (E4179_21575) - 4255451..4257760 (-) 2310 WP_008324284.1 autotransporter outer membrane beta-barrel domain-containing protein -
  E4179_RS21030 (E4179_21580) ssb 4258242..4258766 (-) 525 WP_003031723.1 single-stranded DNA-binding protein SSB1 Machinery gene
  E4179_RS21035 (E4179_21590) uvrA 4259018..4261840 (+) 2823 WP_003031720.1 excinuclease ABC subunit UvrA -
  E4179_RS21040 (E4179_21595) - 4261956..4262312 (-) 357 WP_003031719.1 MmcQ/YjbR family DNA-binding protein -
  E4179_RS21045 (E4179_21600) aphA 4262440..4263153 (-) 714 WP_003031718.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18679.69 Da        Isoelectric Point: 4.9663

>NTDB_id=355397 E4179_RS21030 WP_003031723.1 4258242..4258766(-) (ssb) [Citrobacter freundii strain 680]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGVEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQQQGGWGQPQQPQGGNQFSGGEQSRPQQSAPAAP
SNEPPMDFDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=355397 E4179_RS21030 WP_003031723.1 4258242..4258766(-) (ssb) [Citrobacter freundii strain 680]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTATATGCCGAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGTGAAATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTTGGCAAACTGGCGGAAGTGGCCAGTGAATATCTGCGTAAAGGTTCCCAGGTCTATATC
GAAGGTCAGCTGCGTACCCGCAAATGGACCGATCAGTCCGGCGTAGAAAAGTACACCACTGAAGTTGTTGTTAACGTTGG
CGGCACCATGCAAATGCTGGGCGGTCGTCAGGGCGGTGGTGCTCCGGCAGGTGGCGGCCAGCAGCAGGGTGGTTGGGGTC
AGCCTCAGCAGCCGCAGGGCGGCAATCAGTTCAGCGGCGGCGAGCAATCTCGTCCGCAGCAGTCCGCTCCGGCAGCGCCG
TCTAACGAACCGCCGATGGATTTCGACGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

73.889

100

0.764
  ssb Glaesserella parasuis strain SC1401

56.831

100

0.598
  ssb Neisseria meningitidis MC58

48.045

100

0.494
  ssb Neisseria gonorrhoeae MS11

48.045

100

0.494

Multiple sequence alignment