Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HNEAP_RS00125 Genome accession   NC_013422
Coordinates   29824..30381 (+) Length   185 a.a.
NCBI ID   WP_012822928.1    Uniprot ID   D0KVW4
Organism   Halothiobacillus neapolitanus c2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 24824..35381
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HNEAP_RS00110 (Hneap_0021) - 25490..26074 (+) 585 WP_012822924.1 GspH/FimT family pseudopilin -
  HNEAP_RS00115 (Hneap_0022) - 26258..26629 (+) 372 WP_012822925.1 endonuclease domain-containing protein -
  HNEAP_RS00120 (Hneap_0024) uvrA 26886..29708 (-) 2823 WP_012822927.1 excinuclease ABC subunit UvrA -
  HNEAP_RS00125 (Hneap_0025) ssb 29824..30381 (+) 558 WP_012822928.1 single-stranded DNA-binding protein Machinery gene
  HNEAP_RS00130 (Hneap_0026) ggt 30592..32391 (-) 1800 WP_012822929.1 gamma-glutamyltransferase -
  HNEAP_RS00135 (Hneap_0027) - 32408..33346 (-) 939 WP_012822930.1 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ -
  HNEAP_RS00140 (Hneap_0028) - 33737..34285 (+) 549 WP_012822931.1 metallophosphoesterase family protein -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 19848.79 Da        Isoelectric Point: 5.3476

>NTDB_id=35520 HNEAP_RS00125 WP_012822928.1 29824..30381(+) (ssb) [Halothiobacillus neapolitanus c2]
MATRGINKVIVLGNLGKDPEVRYMPSGGQVTNITVATSETWKDKDSGEQKENTEWHRIVFFGKLAEIAGQYLKKGGQVYV
EGRLQTRKWQGQDGQDRYTTEIVANEMQMLGGRGGSGGSGGGQQESGDYEDDGYSNTPPARGAGRAAAAPARPSSGNRDS
YGAPPPPPRSPAKSEPNFVDDDIPF

Nucleotide


Download         Length: 558 bp        

>NTDB_id=35520 HNEAP_RS00125 WP_012822928.1 29824..30381(+) (ssb) [Halothiobacillus neapolitanus c2]
ATGGCCACTCGTGGAATCAACAAAGTCATTGTCCTGGGCAATCTCGGGAAAGACCCGGAAGTCCGCTACATGCCAAGCGG
CGGGCAGGTGACGAATATTACCGTCGCCACCTCCGAGACCTGGAAAGACAAGGACAGCGGTGAGCAGAAAGAAAACACAG
AGTGGCACCGCATCGTATTCTTTGGCAAGTTGGCGGAAATTGCTGGTCAATACCTGAAAAAAGGCGGCCAGGTCTATGTG
GAAGGCCGTCTGCAAACCCGCAAATGGCAAGGTCAGGATGGACAGGATCGTTACACCACCGAAATCGTCGCCAACGAGAT
GCAAATGCTGGGCGGTCGTGGTGGTTCGGGTGGCTCCGGCGGCGGCCAGCAAGAATCGGGCGACTATGAAGACGATGGCT
ATAGCAACACACCGCCTGCACGTGGCGCCGGTCGTGCCGCCGCGGCACCTGCGCGCCCGTCAAGCGGCAACCGCGACAGC
TACGGCGCCCCGCCACCACCACCGCGCAGCCCTGCTAAATCCGAGCCGAACTTTGTGGATGACGATATTCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-110)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB D0KVW4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

53.684

100

0.551
  ssb Glaesserella parasuis strain SC1401

50.521

100

0.524
  ssb Neisseria meningitidis MC58

51.099

98.378

0.503
  ssb Neisseria gonorrhoeae MS11

50.549

98.378

0.497

Multiple sequence alignment