Detailed information
Bioinformatically predicted
Overview
| Name | recR | Type | Machinery gene |
| Locus tag | GPY21_RS12925 | Genome accession | NZ_CP046754 |
| Coordinates | 861394..861993 (+) | Length | 199 a.a. |
| NCBI ID | WP_005460088.1 | Uniprot ID | Q87MQ4 |
| Organism | Vibrio parahaemolyticus strain 2015AW-0174 | ||
| Function | promote later steps in plasmid transformation (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 856394..866993
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GPY21_RS25710 | - | 857546..857677 (+) | 132 | WP_005380608.1 | hypothetical protein | - |
| GPY21_RS12905 | - | 857693..858097 (+) | 405 | WP_005494429.1 | YbaN family protein | - |
| GPY21_RS12910 | apt | 858263..858808 (+) | 546 | WP_005460112.1 | adenine phosphoribosyltransferase | - |
| GPY21_RS12915 | dnaX | 858817..860952 (+) | 2136 | WP_005494431.1 | DNA polymerase III subunit gamma/tau | - |
| GPY21_RS12920 | - | 861035..861364 (+) | 330 | WP_005460082.1 | YbaB/EbfC family nucleoid-associated protein | - |
| GPY21_RS12925 | recR | 861394..861993 (+) | 600 | WP_005460088.1 | recombination mediator RecR | Machinery gene |
| GPY21_RS12930 | aqpZ | 862044..862742 (-) | 699 | WP_005460095.1 | aquaporin Z | - |
| GPY21_RS12935 | - | 862949..864208 (-) | 1260 | WP_005494432.1 | amino acid permease | - |
| GPY21_RS12940 | - | 864526..864906 (+) | 381 | WP_005494433.1 | RidA family protein | - |
| GPY21_RS12945 | - | 864922..866199 (+) | 1278 | WP_005494434.1 | L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha | - |
| GPY21_RS12950 | - | 866228..866887 (+) | 660 | WP_005397228.1 | PAS domain-containing protein | - |
Sequence
Protein
Download Length: 199 a.a. Molecular weight: 21725.73 Da Isoelectric Point: 5.7468
>NTDB_id=354924 GPY21_RS12925 WP_005460088.1 861394..861993(+) (recR) [Vibrio parahaemolyticus strain 2015AW-0174]
MRTSHMLEQLMEALRCLPGVGPKSAQRMAFHLLQRDRKGGLQLADALSQSMTEIGHCAECRTFTEEEVCHICTNPKRQEN
GQICVVESPADIAAVEATGQYSGRYFVLMGHLSPLDGIGPSDIGLDVLDYRLRRGDISEVILATNPTVEGEATAHYIAEL
CREHQVEASRIAHGVPVGGELELVDGTTLSHSLLGRHKI
MRTSHMLEQLMEALRCLPGVGPKSAQRMAFHLLQRDRKGGLQLADALSQSMTEIGHCAECRTFTEEEVCHICTNPKRQEN
GQICVVESPADIAAVEATGQYSGRYFVLMGHLSPLDGIGPSDIGLDVLDYRLRRGDISEVILATNPTVEGEATAHYIAEL
CREHQVEASRIAHGVPVGGELELVDGTTLSHSLLGRHKI
Nucleotide
Download Length: 600 bp
>NTDB_id=354924 GPY21_RS12925 WP_005460088.1 861394..861993(+) (recR) [Vibrio parahaemolyticus strain 2015AW-0174]
ATGCGTACCAGTCATATGCTGGAACAATTGATGGAGGCCTTACGTTGTCTACCTGGGGTAGGTCCCAAGTCGGCGCAACG
TATGGCCTTTCATTTGTTACAGCGTGATAGAAAAGGCGGTCTGCAACTGGCAGATGCGCTGAGTCAGTCAATGACCGAAA
TTGGTCACTGTGCTGAATGTCGAACTTTTACTGAAGAAGAAGTTTGCCACATTTGTACTAACCCAAAACGCCAAGAAAAC
GGCCAAATTTGTGTAGTAGAAAGCCCGGCAGATATCGCAGCAGTCGAAGCGACGGGTCAATACTCCGGTCGATACTTTGT
GCTTATGGGGCATTTGTCTCCGCTTGATGGCATCGGTCCAAGTGATATTGGTTTAGACGTGCTTGATTATCGTCTACGTC
GAGGTGATATTTCTGAAGTGATCCTTGCAACCAACCCAACGGTTGAGGGAGAAGCTACTGCTCACTATATTGCGGAGTTG
TGCAGAGAGCACCAAGTCGAAGCTAGCCGTATCGCGCACGGTGTGCCTGTAGGTGGGGAGCTTGAGCTTGTAGATGGCAC
GACCTTGTCACACTCATTATTGGGTCGACATAAGATTTAA
ATGCGTACCAGTCATATGCTGGAACAATTGATGGAGGCCTTACGTTGTCTACCTGGGGTAGGTCCCAAGTCGGCGCAACG
TATGGCCTTTCATTTGTTACAGCGTGATAGAAAAGGCGGTCTGCAACTGGCAGATGCGCTGAGTCAGTCAATGACCGAAA
TTGGTCACTGTGCTGAATGTCGAACTTTTACTGAAGAAGAAGTTTGCCACATTTGTACTAACCCAAAACGCCAAGAAAAC
GGCCAAATTTGTGTAGTAGAAAGCCCGGCAGATATCGCAGCAGTCGAAGCGACGGGTCAATACTCCGGTCGATACTTTGT
GCTTATGGGGCATTTGTCTCCGCTTGATGGCATCGGTCCAAGTGATATTGGTTTAGACGTGCTTGATTATCGTCTACGTC
GAGGTGATATTTCTGAAGTGATCCTTGCAACCAACCCAACGGTTGAGGGAGAAGCTACTGCTCACTATATTGCGGAGTTG
TGCAGAGAGCACCAAGTCGAAGCTAGCCGTATCGCGCACGGTGTGCCTGTAGGTGGGGAGCTTGAGCTTGTAGATGGCAC
GACCTTGTCACACTCATTATTGGGTCGACATAAGATTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| recR | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
44.724 |
100 |
0.447 |
| recR | Bacillus subtilis subsp. subtilis str. 168 |
43.216 |
100 |
0.432 |