Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   E5E97_RS02525 Genome accession   NZ_CP038513
Coordinates   486421..486999 (+) Length   192 a.a.
NCBI ID   WP_011707639.1    Uniprot ID   A0AAX0XSG5
Organism   Aeromonas sp. 2692-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 481421..491999
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E5E97_RS02515 (E5E97_02520) uvrA 482314..485142 (-) 2829 WP_118880238.1 excinuclease ABC subunit UvrA -
  E5E97_RS02520 (E5E97_02525) - 485238..485897 (-) 660 WP_011707638.1 LuxR C-terminal-related transcriptional regulator -
  E5E97_RS02525 (E5E97_02530) ssb 486421..486999 (+) 579 WP_011707639.1 single-stranded DNA-binding protein Machinery gene
  E5E97_RS02530 (E5E97_02535) - 487167..487925 (+) 759 WP_011707640.1 ABC transporter substrate-binding protein -
  E5E97_RS23660 (E5E97_02540) - 488006..488128 (-) 123 WP_011707641.1 hypothetical protein -
  E5E97_RS02535 (E5E97_02545) - 488582..489460 (+) 879 WP_044800976.1 cation diffusion facilitator family transporter -
  E5E97_RS02540 (E5E97_02550) - 489610..489894 (+) 285 WP_024946369.1 DUF3811 domain-containing protein -
  E5E97_RS02545 (E5E97_02555) cspA 490294..490506 (+) 213 WP_011707644.1 RNA chaperone/antiterminator CspA -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 21161.56 Da        Isoelectric Point: 5.9247

>NTDB_id=354924 E5E97_RS02525 WP_011707639.1 486421..486999(+) (ssb) [Aeromonas sp. 2692-1]
MASRGINKVILIGNLGQDPEVRYMPSGGAVTNITLATSDTWRDKQTGEQKERTEWHRVVFMGKLAEVAGEYLKKGSQVYV
EGKLQTRKWQDQSGQERYTTEVLVDGFSGVMQMLGGRPQGGAGQGMGGQSQGNWGQQQGMQSQQPMNQARPAQAPQQNMQ
QQGGYARPAQQPQSAPPVYNEPPMDFDDDIPF

Nucleotide


Download         Length: 579 bp        

>NTDB_id=354924 E5E97_RS02525 WP_011707639.1 486421..486999(+) (ssb) [Aeromonas sp. 2692-1]
ATGGCCAGTCGAGGCATCAATAAAGTCATTCTGATCGGTAACCTGGGGCAAGACCCGGAAGTGCGCTACATGCCGAGCGG
CGGTGCCGTGACCAATATCACCCTGGCCACCTCCGACACCTGGCGCGACAAGCAGACCGGTGAGCAGAAAGAGCGCACCG
AGTGGCACCGCGTTGTCTTCATGGGCAAGCTGGCCGAAGTGGCTGGCGAGTACCTGAAGAAAGGCTCCCAAGTCTATGTT
GAAGGCAAGCTGCAGACCCGCAAGTGGCAAGATCAAAGCGGCCAGGAGCGTTACACCACCGAAGTGCTGGTCGATGGCTT
CAGCGGCGTGATGCAGATGCTGGGTGGCCGTCCGCAAGGCGGCGCCGGCCAAGGCATGGGTGGCCAGTCTCAGGGCAACT
GGGGTCAGCAGCAGGGCATGCAGTCCCAGCAGCCGATGAACCAGGCGCGTCCTGCCCAGGCTCCGCAGCAGAACATGCAG
CAACAGGGCGGCTACGCTCGTCCGGCCCAGCAACCACAGTCTGCACCGCCGGTGTACAATGAGCCGCCGATGGACTTCGA
CGACGACATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

66.497

100

0.682
  ssb Glaesserella parasuis strain SC1401

53.684

98.958

0.531
  ssb Neisseria meningitidis MC58

47.917

100

0.479
  ssb Neisseria gonorrhoeae MS11

47.895

98.958

0.474

Multiple sequence alignment