Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   E4664_RS19665 Genome accession   NZ_CP038500
Coordinates   4001496..4001849 (-) Length   117 a.a.
NCBI ID   WP_135536613.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain CIAT758     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 4000093..4017683 4001496..4001849 within 0


Gene organization within MGE regions


Location: 4000093..4017683
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E4664_RS19655 (E4664_19655) - 4000093..4001160 (+) 1068 WP_135536611.1 tyrosine-type recombinase/integrase -
  E4664_RS19660 (E4664_19660) - 4001188..4001484 (-) 297 WP_000218943.1 hypothetical protein -
  E4664_RS19665 (E4664_19665) ssb 4001496..4001849 (-) 354 WP_135536613.1 single-stranded DNA-binding protein Machinery gene
  E4664_RS19670 (E4664_19670) - 4001837..4002109 (-) 273 WP_135536615.1 hypothetical protein -
  E4664_RS19675 (E4664_19675) - 4002112..4002639 (-) 528 WP_135536617.1 hypothetical protein -
  E4664_RS19680 (E4664_19680) - 4002707..4003042 (-) 336 WP_135536619.1 hypothetical protein -
  E4664_RS19685 (E4664_19685) - 4003039..4005777 (-) 2739 WP_135536621.1 toprim domain-containing protein -
  E4664_RS19690 (E4664_19690) - 4005871..4006062 (-) 192 WP_001043481.1 hypothetical protein -
  E4664_RS19695 (E4664_19695) - 4006155..4006496 (+) 342 WP_135536622.1 helix-turn-helix domain-containing protein -
  E4664_RS19700 (E4664_19700) - 4006542..4006757 (-) 216 WP_135536624.1 hypothetical protein -
  E4664_RS19705 (E4664_19705) - 4006858..4007103 (-) 246 WP_135536626.1 hypothetical protein -
  E4664_RS19710 (E4664_19710) - 4007100..4007300 (-) 201 WP_135536628.1 hypothetical protein -
  E4664_RS19715 (E4664_19715) - 4007622..4007945 (-) 324 WP_135536630.1 DUF2511 domain-containing protein -
  E4664_RS19720 (E4664_19720) - 4008025..4008666 (+) 642 WP_135536632.1 SOS response-associated peptidase -
  E4664_RS19725 (E4664_19725) - 4008779..4009279 (+) 501 WP_135536634.1 LexA family protein -
  E4664_RS19730 (E4664_19730) - 4009276..4010571 (+) 1296 WP_135536636.1 Y-family DNA polymerase -
  E4664_RS19740 (E4664_19740) - 4010861..4011061 (-) 201 WP_135536638.1 TraR/DksA C4-type zinc finger protein -
  E4664_RS19745 (E4664_19745) - 4011058..4011297 (-) 240 WP_000113727.1 ogr/Delta-like zinc finger family protein -
  E4664_RS19750 (E4664_19750) - 4011426..4012739 (-) 1314 WP_135536640.1 contractile injection system protein, VgrG/Pvc8 family -
  E4664_RS19755 (E4664_19755) - 4012740..4013180 (-) 441 WP_005137960.1 phage tail protein -
  E4664_RS19760 (E4664_19760) - 4013186..4015636 (-) 2451 WP_135536641.1 phage tail tape measure protein -
  E4664_RS19765 (E4664_19765) - 4015650..4015787 (-) 138 WP_099527947.1 GpE family phage tail protein -
  E4664_RS19770 (E4664_19770) - 4015790..4016131 (-) 342 WP_135536643.1 phage tail assembly protein -
  E4664_RS19775 (E4664_19775) - 4016199..4016717 (-) 519 WP_135536645.1 phage major tail tube protein -

Sequence

Protein


Download         Length: 117 a.a.        Molecular weight: 13285.03 Da        Isoelectric Point: 9.7116

>NTDB_id=354890 E4664_RS19665 WP_135536613.1 4001496..4001849(-) (ssb) [Acinetobacter baumannii strain CIAT758]
MRGINKVILVGVLGANPIPKQYQNGGSYAQFSIATSEKYQDKRTGDWIENTEWHRIVAHNRLGEIACQILKKGSKVYIEG
SLHTRKWTDQNNQDRYVTEVRAITFQALDSLPQANPV

Nucleotide


Download         Length: 354 bp        

>NTDB_id=354890 E4664_RS19665 WP_135536613.1 4001496..4001849(-) (ssb) [Acinetobacter baumannii strain CIAT758]
ATGCGCGGAATAAACAAAGTGATATTGGTCGGTGTACTTGGTGCCAATCCAATTCCCAAACAGTATCAAAACGGTGGCTC
CTATGCTCAGTTTTCAATTGCCACTTCAGAAAAATACCAGGACAAACGCACTGGAGATTGGATTGAAAATACAGAATGGC
ATCGGATTGTTGCCCACAACAGACTTGGTGAAATTGCCTGTCAAATTCTTAAAAAAGGTTCAAAAGTTTATATCGAAGGG
TCATTACATACACGGAAATGGACTGACCAAAACAATCAAGACCGTTATGTAACTGAAGTTAGAGCCATAACATTTCAAGC
GCTCGATAGCTTGCCACAAGCAAACCCGGTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

56.364

94.017

0.53
  ssb Vibrio cholerae strain A1552

55.556

84.615

0.47
  ssb Neisseria gonorrhoeae MS11

41.905

89.744

0.376
  ssb Neisseria meningitidis MC58

41.905

89.744

0.376

Multiple sequence alignment