Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   GPX93_RS12245 Genome accession   NZ_CP046749
Coordinates   2687820..2689898 (+) Length   692 a.a.
NCBI ID   WP_002162723.1    Uniprot ID   -
Organism   Vibrio cholerae strain 2015V-1118     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2682820..2694898
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPX93_RS12225 - 2683510..2684181 (-) 672 WP_001015358.1 7-cyano-7-deazaguanine/7-aminomethyl-7- deazaguanine transporter -
  GPX93_RS12230 gmk 2684549..2685172 (+) 624 WP_089070581.1 guanylate kinase -
  GPX93_RS12235 rpoZ 2685280..2685552 (+) 273 WP_000135052.1 DNA-directed RNA polymerase subunit omega -
  GPX93_RS12240 spoT 2685584..2687701 (+) 2118 WP_000280452.1 bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase -
  GPX93_RS12245 recG 2687820..2689898 (+) 2079 WP_002162723.1 ATP-dependent DNA helicase RecG Machinery gene
  GPX93_RS12250 - 2690245..2691651 (+) 1407 WP_184482933.1 uracil-xanthine permease family protein -
  GPX93_RS12255 envZ 2691676..2692992 (-) 1317 WP_123163035.1 two-component system sensor histidine kinase EnvZ -
  GPX93_RS12260 ompR 2693061..2693921 (-) 861 WP_001292055.1 two-component system response regulator OmpR -

Sequence

Protein


Download         Length: 692 a.a.        Molecular weight: 76949.14 Da        Isoelectric Point: 7.5642

>NTDB_id=354885 GPX93_RS12245 WP_002162723.1 2687820..2689898(+) (recG) [Vibrio cholerae strain 2015V-1118]
MSQLLSAVPLCELSGVGAKVAEKLEKVGLHTVQDLLFHLPLRYEDRTRVYPIVQLHHGLWAAVQGKVMAVDTLFGKRKML
TVKISDGNGTLTLRFFNFTAAMKNNFAEGKFVHAYGEIKRGNQGLEIIHPDYKFFAPAQTPDVEPNLTPVYPTTEGLRQL
TLRNLTDQALVLLEKSAVQELLPSGLYDQQMTLAQALKIIHRPSADIDLRLFEQGRHPAQVRLIMEELLAQNLSMLAIRS
QGQQDVALPLAPVHQLKQQLLAQLPFSPTKAQQRVVAEIEADLEKPHPMMRLVQGDVGSGKTLVAALAAVRAIEHGYQVA
LMAPTELLAEQHSLNFAQWLEPMGIQVGWLAGKLKGKARETELARIASGEVKMVVGTHALFQEQVSFDHLALVIIDEQHR
FGVHQRLELREKGAKQGAYPHQLIMTATPIPRTLAMTAYADLETSVIDELPPGRTPIQTVAIPDTKRDDIVERIRHACLN
EGKQAYWVCTLIDESEVLEAQAAAETAEELQRKLPEVKIGLVHGRMKPAEKQAVMQAFKNNELHLLVATTVIEVGVDVPN
ASLMIIENPERLGLAQLHQLRGRVGRGTVASHCVLLFHAPLSKTAQKRLGVLRESNDGFVIAQRDLEIRGPGELLGTKQT
GLADFKIADLVRDQQLVPQVQRIARHIHERYPQNAQAIIDRWLGERDIYAKA

Nucleotide


Download         Length: 2079 bp        

>NTDB_id=354885 GPX93_RS12245 WP_002162723.1 2687820..2689898(+) (recG) [Vibrio cholerae strain 2015V-1118]
ATGTCACAACTCCTTTCAGCCGTTCCTCTTTGTGAACTCTCCGGTGTCGGGGCCAAAGTCGCCGAAAAACTGGAGAAAGT
CGGTTTGCACACCGTGCAGGATCTGCTGTTTCATCTTCCGCTACGTTATGAAGATCGCACTCGCGTTTATCCGATAGTGC
AACTGCACCACGGTTTATGGGCCGCGGTACAAGGCAAAGTGATGGCAGTGGATACCCTGTTTGGCAAACGCAAAATGCTC
ACCGTGAAAATCAGTGATGGCAACGGTACACTGACACTGCGTTTTTTTAACTTCACCGCGGCGATGAAAAACAACTTTGC
GGAAGGCAAATTTGTGCATGCCTATGGGGAAATCAAACGGGGTAATCAAGGCTTAGAGATCATCCATCCTGACTACAAAT
TCTTTGCCCCTGCACAAACGCCCGATGTTGAGCCGAACCTGACTCCGGTTTACCCAACTACCGAAGGCTTACGCCAACTC
ACCCTACGTAATTTGACTGACCAAGCGTTGGTGCTACTGGAAAAATCTGCGGTGCAGGAGTTACTGCCATCCGGACTTTA
CGATCAGCAGATGACCTTAGCCCAAGCGCTGAAAATCATTCATCGCCCATCGGCGGATATCGATTTGCGCCTGTTTGAAC
AAGGGCGACATCCGGCGCAAGTTCGGCTGATCATGGAAGAACTGCTAGCGCAGAATCTCTCTATGCTCGCGATTCGCAGT
CAAGGCCAGCAAGATGTGGCCTTACCACTGGCACCCGTCCACCAACTCAAACAACAACTCTTGGCACAATTGCCCTTTTC
TCCGACTAAGGCGCAGCAACGTGTGGTTGCCGAAATCGAAGCGGATTTAGAAAAACCACATCCAATGATGCGCTTAGTGC
AAGGCGATGTGGGCTCAGGCAAAACCTTAGTCGCAGCGCTTGCGGCAGTTCGCGCTATTGAACATGGTTATCAAGTGGCC
TTGATGGCTCCTACCGAGCTACTGGCCGAGCAGCACTCGCTCAATTTTGCGCAGTGGCTGGAACCGATGGGCATTCAAGT
GGGGTGGCTCGCGGGTAAACTCAAAGGCAAAGCGCGGGAAACGGAGCTGGCACGCATCGCCAGCGGCGAAGTGAAAATGG
TGGTCGGCACCCATGCACTGTTTCAAGAGCAAGTGTCGTTTGACCATCTAGCCTTGGTGATTATTGATGAGCAACATCGC
TTCGGTGTACATCAGCGTTTAGAGCTGCGCGAGAAAGGCGCAAAACAAGGCGCGTATCCGCATCAGCTCATCATGACTGC
TACTCCGATCCCGCGTACTTTGGCGATGACGGCTTATGCCGATTTGGAAACCTCAGTGATTGATGAGTTACCCCCCGGGC
GTACTCCGATTCAAACCGTAGCGATTCCGGATACCAAACGCGATGATATTGTCGAGCGCATTCGCCACGCCTGCCTCAAC
GAAGGCAAGCAAGCGTATTGGGTGTGTACTTTGATTGATGAATCCGAAGTGCTGGAAGCGCAAGCGGCCGCAGAAACGGC
GGAGGAACTGCAACGTAAACTGCCCGAAGTCAAAATCGGCTTAGTGCATGGCCGGATGAAACCGGCTGAGAAGCAAGCGG
TAATGCAAGCGTTTAAAAACAATGAGCTGCATCTGCTCGTAGCCACCACAGTGATTGAAGTGGGCGTGGATGTGCCTAAT
GCCAGCTTGATGATCATTGAAAACCCCGAACGTTTGGGGCTAGCTCAACTTCACCAGCTACGCGGCCGTGTTGGGCGTGG
TACCGTAGCCAGCCATTGTGTGCTGCTGTTTCATGCACCACTCTCCAAAACCGCGCAAAAGCGTTTGGGCGTTTTGCGTG
AAAGCAACGATGGATTTGTCATCGCGCAGCGCGACTTGGAAATTCGCGGCCCCGGAGAGCTATTAGGCACCAAACAAACC
GGCTTAGCCGATTTCAAAATTGCTGATCTGGTACGCGATCAGCAACTGGTTCCGCAAGTGCAACGCATCGCGCGACATAT
CCATGAACGCTACCCACAGAATGCACAAGCTATCATCGACCGCTGGTTAGGCGAGCGTGATATTTACGCCAAAGCTTAG

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(479-587)

DEAD/DEAH box helicase (DEAD)

(271-432)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(616-674)

RecG wedge domain (RecG_wedge)

(15-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

50.595

97.11

0.491
  recG/mmsA Streptococcus pneumoniae R6

39.701

96.821

0.384
  recG/mmsA Streptococcus pneumoniae R36A

39.701

96.821

0.384
  recG Bacillus subtilis subsp. subtilis str. 168

39.324

94.075

0.37

Multiple sequence alignment