Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   E4664_RS18580 Genome accession   NZ_CP038500
Coordinates   3798837..3799655 (+) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain CIAT758     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3793837..3804655
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E4664_RS18545 (E4664_18545) - 3794420..3794550 (-) 131 Protein_3615 hypothetical protein -
  E4664_RS18550 (E4664_18550) rpoZ 3794588..3794866 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  E4664_RS18555 (E4664_18555) gmk 3794939..3795568 (-) 630 WP_000015936.1 guanylate kinase -
  E4664_RS18560 (E4664_18560) ispH 3795691..3796641 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  E4664_RS18565 (E4664_18565) fimU 3796811..3797284 (+) 474 WP_001214068.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  E4664_RS18570 (E4664_18570) pilV 3797278..3797838 (+) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  E4664_RS18575 (E4664_18575) pilW 3797839..3798840 (+) 1002 WP_000079199.1 PilW family protein Machinery gene
  E4664_RS18580 (E4664_18580) pilX 3798837..3799655 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  E4664_RS18585 (E4664_18585) pilY1 3799667..3803521 (+) 3855 WP_000768944.1 PilC/PilY family type IV pilus protein Machinery gene
  E4664_RS18590 (E4664_18590) pilY2 3803534..3804016 (+) 483 WP_001046421.1 type IV pilin protein Machinery gene
  E4664_RS18595 (E4664_18595) pilE 3804013..3804438 (+) 426 WP_000788337.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=354883 E4664_RS18580 WP_000149374.1 3798837..3799655(+) (pilX) [Acinetobacter baumannii strain CIAT758]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=354883 E4664_RS18580 WP_000149374.1 3798837..3799655(+) (pilX) [Acinetobacter baumannii strain CIAT758]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCTTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGAGCAAGTTTGCTTCGAGCTGGCAGCGCCAATAATGCTGTGGTTGAAGACGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATCCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCAACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACCCTA
GCTGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993

Multiple sequence alignment