Detailed information    

insolico Bioinformatically predicted

Overview


Name   dprA   Type   Machinery gene
Locus tag   E4664_RS15960 Genome accession   NZ_CP038500
Coordinates   3253431..3254561 (+) Length   376 a.a.
NCBI ID   WP_031945334.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain CIAT758     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context


Location: 3248431..3259561
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E4664_RS15935 (E4664_15935) - 3248691..3248897 (-) 207 WP_000182542.1 hypothetical protein -
  E4664_RS15940 (E4664_15940) - 3248951..3251065 (-) 2115 WP_001120685.1 TonB-dependent copper receptor -
  E4664_RS15945 (E4664_15945) - 3251137..3251565 (-) 429 WP_000231986.1 DUF2946 family protein -
  E4664_RS15950 (E4664_15950) def 3251602..3252132 (-) 531 WP_001196539.1 peptide deformylase -
  E4664_RS15955 (E4664_15955) tsaP 3252256..3253410 (+) 1155 WP_020752706.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  E4664_RS15960 (E4664_15960) dprA 3253431..3254561 (+) 1131 WP_031945334.1 DNA-processing protein DprA Machinery gene
  E4664_RS15965 (E4664_15965) - 3254612..3255181 (+) 570 WP_000633612.1 L-threonylcarbamoyladenylate synthase -
  E4664_RS15970 (E4664_15970) - 3255573..3256493 (-) 921 WP_000084546.1 DMT family transporter -
  E4664_RS15975 (E4664_15975) - 3256599..3257249 (-) 651 WP_086225940.1 TetR/AcrR family transcriptional regulator -
  E4664_RS15980 (E4664_15980) - 3257386..3258600 (+) 1215 WP_000372841.1 MFS transporter -
  E4664_RS15985 (E4664_15985) - 3258622..3259386 (+) 765 WP_000786954.1 AraC family transcriptional regulator -

Sequence


Protein


Download         Length: 376 a.a.        Molecular weight: 41770.30 Da        Isoelectric Point: 6.7195

>NTDB_id=354870 E4664_RS15960 WP_031945334.1 3253431..3254561(+) (dprA) [Acinetobacter baumannii strain CIAT758]
MLTQLSSHHYHTLKVWYLVQHSLVSFKKIIDYFGNCEKATQPDGLAKWSSLGLHANHLKRVNEFQTPQGQAQFEQLVQQV
RQHTDFILTAGDSGYPSQLLPYTDYPPIIFGKGQAQALLQPQIAIVGSRKPSPHGRQVAYDFAYYLSEKGFFISSGLAYG
IDEAAHQGASTHQRTIAVTGTGLDTTYPAQNKKLAGHILAQNGAIITEFLPGTPPLQQHFPRRNRIVSGLSLGVLVVEAT
LKSGSLITANKAAEQGKTVFAIPGHIYSEFHQGCHQLIREGAILIDHPEQIIEDLALPTQWQSQQQNQTEEANTNTPEIP
EHLIDLYQSLDWVGQNIDQLVVHHNIPVSELTSSLMELELLGLCMQQSGLYLRCRS

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=354870 E4664_RS15960 WP_031945334.1 3253431..3254561(+) (dprA) [Acinetobacter baumannii strain CIAT758]
ATGCTCACTCAACTTTCTTCACACCACTACCACACACTTAAAGTGTGGTATTTGGTGCAGCACTCTTTAGTTAGCTTTAA
AAAAATTATTGATTATTTTGGAAATTGTGAAAAAGCCACTCAACCTGATGGTTTAGCAAAGTGGTCCTCTCTGGGGCTAC
ATGCTAATCACTTAAAGCGTGTAAACGAATTTCAAACGCCCCAAGGTCAGGCGCAGTTTGAACAACTTGTACAACAAGTT
CGTCAGCATACGGATTTTATTTTAACGGCAGGTGACTCAGGCTACCCCTCTCAATTACTTCCTTATACAGATTATCCACC
TATTATTTTTGGGAAAGGTCAAGCGCAAGCTTTATTGCAACCTCAGATTGCGATTGTCGGTAGCCGAAAACCAAGCCCAC
ATGGACGACAGGTCGCTTATGATTTTGCTTACTACTTAAGTGAAAAGGGCTTTTTCATTAGTAGTGGTCTGGCTTATGGC
ATTGATGAAGCCGCACATCAAGGTGCATCTACTCATCAACGTACCATTGCAGTGACGGGTACGGGCTTAGACACTACTTA
TCCAGCTCAAAATAAAAAACTTGCAGGACATATTTTGGCTCAAAACGGCGCCATTATTACTGAGTTTTTACCGGGTACAC
CGCCATTACAACAGCATTTTCCACGTAGAAACCGAATTGTCAGCGGTTTGAGTTTAGGCGTTTTGGTGGTAGAAGCGACA
TTAAAAAGTGGCTCACTCATCACGGCCAATAAAGCTGCTGAACAAGGTAAAACCGTATTCGCGATTCCGGGCCATATTTA
TAGCGAGTTTCATCAAGGATGCCATCAACTTATCCGTGAAGGTGCAATTTTAATCGACCATCCTGAACAGATTATTGAGG
ATCTTGCTTTACCAACCCAATGGCAAAGTCAGCAACAAAATCAAACTGAAGAAGCTAATACGAATACTCCAGAAATTCCT
GAGCATTTGATTGACCTTTATCAGTCTTTAGACTGGGTGGGACAAAATATTGACCAACTTGTAGTTCACCATAATATTCC
AGTTTCTGAACTGACCTCTTCACTAATGGAACTAGAACTACTCGGTTTATGTATGCAACAATCAGGGCTGTATTTACGTT
GTCGTTCTTAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Acinetobacter baumannii strain A118

97.872

100

0.979

  dprA Acinetobacter baumannii D1279779

97.606

100

0.976

  dprA Acinetobacter baylyi ADP1

70.341

100

0.713

  dprA Vibrio cholerae strain A1552

42.598

88.032

0.375


Multiple sequence alignment