Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   E2566_RS17475 Genome accession   NZ_CP038498
Coordinates   3846425..3846967 (+) Length   180 a.a.
NCBI ID   WP_014701314.1    Uniprot ID   A0AAE9SYY7
Organism   Pectobacterium punjabense strain SS95     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3841425..3851967
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E2566_RS17460 (E2566_17610) - 3841925..3842428 (+) 504 WP_107168076.1 M48 family metallopeptidase -
  E2566_RS17465 (E2566_17615) - 3842830..3843249 (-) 420 WP_107168075.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  E2566_RS17470 (E2566_17620) uvrA 3843265..3846099 (-) 2835 WP_107168074.1 excinuclease ABC subunit UvrA -
  E2566_RS17475 (E2566_17625) ssb 3846425..3846967 (+) 543 WP_014701314.1 single-stranded DNA-binding protein SSB1 Machinery gene
  E2566_RS17480 (E2566_17630) - 3847128..3848321 (+) 1194 WP_107168073.1 tyrosine-type recombinase/integrase -
  E2566_RS17485 (E2566_17635) - 3848321..3849880 (+) 1560 WP_107168072.1 site-specific integrase -
  E2566_RS17490 (E2566_17640) - 3849882..3851897 (+) 2016 WP_107168071.1 integrase -

Sequence

Protein


Download         Length: 180 a.a.        Molecular weight: 19099.08 Da        Isoelectric Point: 5.2456

>NTDB_id=354817 E2566_RS17475 WP_014701314.1 3846425..3846967(+) (ssb) [Pectobacterium punjabense strain SS95]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKQTGEQKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGALQTRKWADQAGVERYTTEVVVNVGGTMQMLGGRQGGGAPAGGNAGGGQQQGGWGQPQQPQGGNQFSGGAQAQQRPAQ
NSAPAQSNEPPMDFDDDIPF

Nucleotide


Download         Length: 543 bp        

>NTDB_id=354817 E2566_RS17475 WP_014701314.1 3846425..3846967(+) (ssb) [Pectobacterium punjabense strain SS95]
ATGGCCAGCAGAGGCGTTAATAAAGTGATTCTTGTCGGGAATCTGGGTCAAGACCCGGAAGTCCGCTATATGCCGAATGG
TGGTGCAGTTGCCAACATCACGCTGGCTACGTCGGAAAGCTGGCGTGACAAGCAAACCGGTGAGCAGAAAGAGAAGACCG
AATGGCACCGTGTGGTGCTGTTCGGCAAACTGGCGGAAGTGGCGGGCGAATACCTGCGCAAAGGCTCTCAGGTTTACATC
GAAGGCGCACTGCAAACCCGTAAATGGGCGGATCAGGCTGGCGTAGAGCGTTACACCACCGAGGTGGTCGTCAATGTCGG
CGGCACCATGCAGATGCTAGGTGGACGCCAAGGTGGCGGCGCACCAGCAGGTGGTAACGCCGGTGGCGGCCAGCAGCAAG
GCGGTTGGGGTCAACCTCAGCAGCCGCAGGGCGGCAACCAATTCAGCGGCGGCGCACAAGCTCAGCAGCGCCCAGCACAG
AATAGCGCGCCCGCACAAAGCAACGAACCACCAATGGATTTCGACGACGACATTCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

72.193

100

0.75
  ssb Glaesserella parasuis strain SC1401

57.297

100

0.589
  ssb Neisseria meningitidis MC58

46.369

99.444

0.461
  ssb Neisseria gonorrhoeae MS11

46.369

99.444

0.461

Multiple sequence alignment