Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   D11S_RS02145 Genome accession   NC_013416
Coordinates   415027..415506 (-) Length   159 a.a.
NCBI ID   WP_005544986.1    Uniprot ID   -
Organism   Aggregatibacter actinomycetemcomitans D11S-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 410027..420506
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D11S_RS02120 (D11S_0451) - 410390..410782 (+) 393 WP_005544975.1 hypothetical protein -
  D11S_RS02125 (D11S_0452) comE 410802..412211 (+) 1410 WP_005544978.1 type IV pilus secretin PilQ Machinery gene
  D11S_RS02130 (D11S_0453) aroK 412425..412952 (+) 528 WP_005555432.1 shikimate kinase AroK -
  D11S_RS02135 (D11S_0454) aroB 412976..414064 (+) 1089 WP_005544982.1 3-dehydroquinate synthase -
  D11S_RS02140 (D11S_0455) - 414067..414921 (+) 855 WP_005544984.1 Dam family site-specific DNA-(adenine-N6)-methyltransferase -
  D11S_RS02145 (D11S_0456) ssb 415027..415506 (-) 480 WP_005544986.1 single-stranded DNA-binding protein Machinery gene
  D11S_RS02150 (D11S_0457) uvrA 415677..418508 (+) 2832 WP_005544988.1 excinuclease ABC subunit UvrA -
  D11S_RS02155 (D11S_0458) - 418577..418987 (-) 411 WP_005544990.1 MerR family transcriptional regulator -
  D11S_RS02160 (D11S_0459) - 419096..419407 (-) 312 WP_005544992.1 DciA family protein -
  D11S_RS02165 (D11S_0460) secM 419499..419816 (+) 318 WP_005544997.1 secA translation cis-regulator SecM -

Sequence

Protein


Download         Length: 159 a.a.        Molecular weight: 17861.64 Da        Isoelectric Point: 5.3111

>NTDB_id=35476 D11S_RS02145 WP_005544986.1 415027..415506(-) (ssb) [Aggregatibacter actinomycetemcomitans D11S-1]
MAGVNKVIIVGNLGNDPEVRTMPNGEAVANITVATSESWNDKNTGERREVTEWHRIVFYRRQAEVAGEYLRKGSKVYVEG
RLRTRKWQDQNGQDRYTTEIQGDVLQMLDSRADRQSGGNYTPTSQPSYPNQQQSAPRSAPASKPAAEAPMDNFDDDIPF

Nucleotide


Download         Length: 480 bp        

>NTDB_id=35476 D11S_RS02145 WP_005544986.1 415027..415506(-) (ssb) [Aggregatibacter actinomycetemcomitans D11S-1]
ATGGCTGGAGTAAATAAAGTGATTATTGTCGGTAATTTAGGTAACGATCCTGAAGTCCGCACCATGCCGAACGGCGAAGC
CGTCGCCAATATCACCGTTGCCACCAGTGAAAGCTGGAATGACAAAAACACCGGTGAACGCCGCGAAGTCACCGAATGGC
ACCGCATCGTATTTTATCGCCGCCAGGCGGAAGTGGCGGGGGAATACCTGCGTAAAGGGTCTAAAGTCTATGTCGAAGGA
CGCTTAAGAACCCGTAAATGGCAGGATCAAAACGGTCAAGATCGCTACACCACCGAAATCCAGGGCGACGTTTTACAAAT
GTTAGACAGCCGCGCCGATCGCCAATCCGGCGGAAACTACACACCGACATCCCAACCAAGTTATCCAAACCAACAACAAA
GCGCCCCACGCAGTGCGCCGGCAAGTAAACCTGCCGCCGAAGCGCCGATGGATAATTTTGATGATGATATTCCTTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

70

100

0.792
  ssb Vibrio cholerae strain A1552

57.471

100

0.629
  ssb Neisseria meningitidis MC58

47.159

100

0.522
  ssb Neisseria gonorrhoeae MS11

47.159

100

0.522

Multiple sequence alignment