Detailed information NTG0354469

Bioinformatically predicted

Overview

• Name: pilC
• Type: Machinery gene
• Locus tag: EBI04_RS00185
• Genome accession: NZ_CP038452
• Coordinates: 36527..37747 (+)
• Length: 406 a.a.
• NCBI ID: WP_135255531.1
• Uniprot ID: -
• Organism: Thermus caldilimi strain YIM 78456
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 31527..42747

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EBI04_RS00165	-	33726..34340 (-)	615	WP_206202080.1	GNAT family N-acetyltransferase	-
EBI04_RS00170	-	34377..35477 (+)	1101	WP_135255528.1	PIG-L deacetylase family protein	-
EBI04_RS00175	scpB	35403..35945 (-)	543	WP_135255529.1	SMC-Scp complex subunit ScpB	-
EBI04_RS00180	-	35938..36528 (-)	591	WP_135255530.1	L-threonylcarbamoyladenylate synthase	-
EBI04_RS00185	pilC	36527..37747 (+)	1221	WP_135255531.1	type II secretion system F family protein	Machinery gene
EBI04_RS00190	-	37722..38174 (-)	453	WP_135255532.1	EVE domain-containing protein	-
EBI04_RS00195	-	38245..38727 (+)	483	WP_135255533.1	hypothetical protein	-
EBI04_RS00200	-	38737..40104 (+)	1368	WP_135255534.1	FAD-binding oxidoreductase	-
EBI04_RS00205	-	40136..40576 (+)	441	Protein_38	GGDEF domain-containing protein	-
EBI04_RS00210	-	40573..41652 (-)	1080	WP_135255535.1	prephenate dehydrogenase/arogenate dehydrogenase family protein	-
EBI04_RS00215	aroF	41649..42683 (-)	1035	WP_135255536.1	3-deoxy-7-phosphoheptulonate synthase	-

Sequence

Protein

• Length: 406 a.a.
• Molecular weight: 44763.74 Da
• Isoelectric Point: 9.9460

>NTDB_id=354469 EBI04_RS00185 WP_135255531.1 36527..37747(+) (pilC) [Thermus caldilimi strain YIM 78456]
MPVYQYKARDRQGRLVEATIEAEDLRTAARLLRDRGLFVAEIKEPGRGLQAEVRLPALERGPGLKDLAIFSRQLATMLGA
GLTLLQSLSILERQTENKKFREIIKKVRTDIEGGMAFSDALAKHKLFSRLYVNLVRAGETSGGLDVILDRLATFLEKDLE
LRGKIRSAMTYPVIVFVFAVGVAYFLLTGIVPQFAQILTDLGSELPLLTRFLIALSNFLRAATLPLVLLAVVLFFAYRWY
YGTPQGRKVVDRIKLRVPVFGNLNRKTAVARFSRTLALLLQSGVNIVESLDITKGTAGNSVVEEIVDTARLKVQQGEPLN
LTLAQHPFVFPPMVSSMVAIGEETGALDTLLSKIADFYEREVDEAVASLTAAIEPLMIIFLGVIVGMIVAGMFLPLFKII
GTLSAQ

Nucleotide

• Length: 1221 bp

>NTDB_id=354469 EBI04_RS00185 WP_135255531.1 36527..37747(+) (pilC) [Thermus caldilimi strain YIM 78456]
ATGCCAGTCTACCAGTATAAGGCCCGCGACCGCCAGGGCCGCCTGGTGGAGGCCACCATCGAGGCGGAGGATCTGCGCAC
CGCCGCCAGGCTCCTCCGGGACCGGGGGCTTTTCGTGGCCGAAATCAAGGAGCCGGGGAGGGGCCTGCAGGCCGAGGTGC
GCCTTCCTGCCCTGGAAAGGGGCCCTGGCCTGAAGGACCTGGCCATCTTCTCCCGGCAGCTGGCCACCATGCTGGGGGCG
GGGCTCACGCTTTTGCAGTCCCTCTCCATCCTGGAAAGGCAGACCGAGAACAAGAAGTTCCGGGAGATCATCAAGAAGGT
CCGCACTGACATCGAAGGGGGCATGGCCTTTTCCGACGCCCTGGCCAAGCACAAGCTCTTCTCCCGGCTTTACGTGAACC
TGGTGCGGGCCGGGGAGACCTCGGGCGGGCTGGACGTGATCCTGGACCGCCTGGCCACCTTCCTGGAGAAGGACCTGGAG
CTCAGGGGCAAGATCCGTAGCGCCATGACCTATCCCGTGATCGTCTTCGTCTTCGCCGTGGGTGTGGCCTACTTCCTCCT
CACGGGCATCGTGCCCCAGTTCGCCCAGATCCTCACGGACCTGGGCTCGGAGCTCCCCCTCCTTACCCGTTTCCTCATCG
CCCTTTCCAACTTCCTGCGGGCGGCCACGTTGCCCCTCGTGCTTTTGGCGGTGGTTCTCTTCTTCGCCTACCGCTGGTAC
TACGGCACCCCTCAGGGCCGCAAGGTCGTGGACCGGATCAAGCTCCGCGTCCCCGTCTTCGGCAACCTCAACCGCAAGAC
CGCCGTGGCCCGCTTCTCCCGGACCCTGGCCCTCCTCCTGCAGAGTGGGGTGAACATCGTGGAGTCCCTGGACATCACCA
AGGGGACGGCGGGCAACAGCGTGGTGGAGGAGATCGTGGACACGGCCAGGCTCAAGGTCCAGCAAGGGGAGCCTTTAAAC
CTCACCCTGGCCCAGCATCCCTTCGTCTTCCCCCCCATGGTGAGCTCCATGGTGGCCATCGGGGAGGAGACGGGAGCCCT
GGACACCCTCCTTTCCAAGATCGCCGACTTCTACGAGCGGGAGGTGGACGAGGCGGTGGCCAGCCTCACCGCCGCCATCG
AGCCCCTCATGATCATCTTCCTGGGCGTGATCGTGGGCATGATCGTGGCGGGGATGTTCCTGCCCCTCTTCAAGATCATC
GGCACCCTTTCCGCGCAATAA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (272-395)

• Type II secretion system (T2SS), protein F (T2SSF) (70-192)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilC	Thermus thermophilus HB27	91.872	100	0.919
pilC	Acinetobacter baylyi ADP1	36.973	99.261	0.367
pilC	Pseudomonas stutzeri DSM 10701	36.908	98.768	0.365