Detailed information NTG0354441

Bioinformatically predicted

Overview

• Name: ssb
• Type: Machinery gene
• Locus tag: E4188_RS09900
• Genome accession: NZ_CP038448
• Coordinates: 2096690..2097265 (-)
• Length: 191 a.a.
• NCBI ID: WP_005328769.1
• Uniprot ID: -
• Organism: Aeromonas media strain R50-22
• Function: ssDNA binding (predicted from homology) DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
Genomic island	2082877..2096525	2096690..2097265	flank	165

Gene organization within MGE regions

Location: 2082877..2097265

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
E4188_RS09840 (E4188_09965)	-	2082991..2083461 (+)	471	WP_017780886.1	hypothetical protein	-
E4188_RS09845 (E4188_09970)	-	2083671..2083862 (+)	192	WP_017780887.1	hypothetical protein	-
E4188_RS09850 (E4188_09975)	tetR	2084194..2084829 (-)	636	WP_017780888.1	tetracycline resistance transcriptional repressor TetR	-
E4188_RS09855 (E4188_09980)	tet(E)	2084910..2086127 (+)	1218	WP_017780889.1	tetracycline efflux MFS transporter Tet(E)	-
E4188_RS09860 (E4188_09985)	-	2086215..2086883 (-)	669	WP_017780890.1	hypothetical protein	-
E4188_RS24010 (E4188_09990)	-	2087042..2087203 (-)	162	Protein_1902	IS5/IS1182 family transposase	-
E4188_RS09865 (E4188_09995)	-	2087421..2089583 (-)	2163	WP_171269529.1	AAA family ATPase	-
E4188_RS09870 (E4188_10000)	-	2089691..2090859 (+)	1169	WP_085943968.1	IS3-like element ISAeme20 family transposase	-
E4188_RS09875 (E4188_10005)	-	2090880..2091284 (-)	405	WP_171269530.1	VPA1267 family protein	-
E4188_RS09880 (E4188_10010)	-	2091284..2091763 (-)	480	WP_049866848.1	hypothetical protein	-
E4188_RS09885 (E4188_10015)	-	2091751..2093628 (-)	1878	WP_041207315.1	integrase	-
E4188_RS09890 (E4188_10020)	-	2093638..2095206 (-)	1569	WP_171269322.1	site-specific integrase	-
E4188_RS09895 (E4188_10025)	-	2095203..2096525 (-)	1323	WP_041207317.1	site-specific integrase	-
E4188_RS09900 (E4188_10030)	ssb	2096690..2097265 (-)	576	WP_005328769.1	single-stranded DNA-binding protein	Machinery gene

Sequence

Protein

• Length: 191 a.a.
• Molecular weight: 20953.37 Da
• Isoelectric Point: 5.9247

>NTDB_id=354441 E4188_RS09900 WP_005328769.1 2096690..2097265(-) (ssb) [Aeromonas media strain R50-22]
MASRGINKVILIGNLGQDPEVRYMPSGGAVTNITLATSDTWRDKQTGEQKERTEWHRVVFMGKLAEVAGEYLKKGSQVYV
EGKLQTRKWQDQSGQERYTTEVLVDSFTGVMQMLGGRPQGGAGQGMGGQQSQGNWGQPQQAAPQQAMQRPAAAPQQNMQP
QGGYGRPAQQPQSAPPVYNEPPMDFDDDIPF

Nucleotide

• Length: 576 bp

>NTDB_id=354441 E4188_RS09900 WP_005328769.1 2096690..2097265(-) (ssb) [Aeromonas media strain R50-22]
ATGGCCAGTCGAGGCATCAACAAAGTCATTCTGATCGGTAACCTGGGGCAAGACCCGGAAGTGCGCTACATGCCGAGCGG
CGGTGCCGTGACTAACATCACCCTGGCCACCTCCGACACCTGGCGCGACAAGCAGACCGGTGAGCAGAAAGAGCGAACCG
AGTGGCACCGCGTGGTGTTCATGGGCAAGCTGGCCGAAGTGGCCGGCGAGTACCTGAAGAAGGGTTCCCAGGTCTATGTC
GAAGGCAAGCTGCAGACCCGCAAGTGGCAGGATCAGAGTGGCCAGGAGCGTTACACCACAGAGGTGCTGGTCGACAGCTT
CACCGGCGTAATGCAGATGCTGGGCGGCCGTCCGCAAGGCGGCGCAGGCCAGGGCATGGGTGGTCAACAGTCCCAGGGCA
ACTGGGGTCAGCCACAACAGGCCGCCCCCCAGCAAGCGATGCAACGCCCGGCCGCCGCCCCGCAGCAGAATATGCAGCCG
CAGGGTGGTTACGGTCGTCCTGCCCAGCAGCCTCAGTCTGCACCGCCGGTCTACAACGAGCCGCCGATGGATTTCGACGA
CGATATCCCGTTCTAG

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (6-107)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssb	Vibrio cholerae strain A1552	69.744	100	0.712
ssb	Glaesserella parasuis strain SC1401	53.968	98.953	0.534
ssb	Neisseria meningitidis MC58	46.809	98.429	0.461
ssb	Neisseria gonorrhoeae MS11	46.237	97.382	0.45