Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | E4187_RS01870 | Genome accession | NZ_CP038445 |
| Coordinates | 404979..405554 (-) | Length | 191 a.a. |
| NCBI ID | WP_005328769.1 | Uniprot ID | - |
| Organism | Aeromonas media strain R25-3 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 371667..405554 | 404979..405554 | within | 0 |
Gene organization within MGE regions
Location: 371667..405554
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| E4187_RS01715 (E4187_01745) | cspA | 371667..371879 (-) | 213 | WP_025328559.1 | RNA chaperone/antiterminator CspA | - |
| E4187_RS01720 (E4187_01750) | yjbD | 372273..372557 (-) | 285 | WP_025328558.1 | DUF3811 domain-containing protein | - |
| E4187_RS23065 (E4187_01755) | - | 372898..373020 (+) | 123 | WP_080675244.1 | hypothetical protein | - |
| E4187_RS01725 (E4187_01760) | - | 373069..373839 (-) | 771 | WP_005328770.1 | transporter substrate-binding domain-containing protein | - |
| E4187_RS23175 | - | 374321..374443 (+) | 123 | Protein_329 | hypothetical protein | - |
| E4187_RS23180 (E4187_01765) | - | 374528..375274 (+) | 747 | WP_113725460.1 | DUF4113 domain-containing protein | - |
| E4187_RS01735 (E4187_01770) | - | 375383..375691 (-) | 309 | WP_047440196.1 | helix-turn-helix transcriptional regulator | - |
| E4187_RS01740 (E4187_01775) | - | 375790..376260 (+) | 471 | WP_017780886.1 | hypothetical protein | - |
| E4187_RS01745 (E4187_01780) | - | 376470..376661 (+) | 192 | WP_017780887.1 | hypothetical protein | - |
| E4187_RS01750 (E4187_01785) | tetR | 376993..377628 (-) | 636 | WP_017780888.1 | tetracycline resistance transcriptional repressor TetR | - |
| E4187_RS01755 (E4187_01790) | tet(E) | 377709..378926 (+) | 1218 | WP_017780889.1 | tetracycline efflux MFS transporter Tet(E) | - |
| E4187_RS01760 (E4187_01795) | - | 379014..379682 (-) | 669 | WP_017780890.1 | hypothetical protein | - |
| E4187_RS22815 (E4187_01800) | - | 379841..380002 (-) | 162 | Protein_337 | IS5/IS1182 family transposase | - |
| E4187_RS01765 (E4187_01805) | - | 380220..382382 (-) | 2163 | WP_171269529.1 | AAA family ATPase | - |
| E4187_RS01770 (E4187_01810) | - | 382490..383658 (+) | 1169 | WP_085943968.1 | IS3-like element ISAeme20 family transposase | - |
| E4187_RS01775 (E4187_01815) | - | 383679..384083 (-) | 405 | WP_171269530.1 | VPA1267 family protein | - |
| E4187_RS01780 (E4187_01820) | - | 384083..384562 (-) | 480 | WP_049866848.1 | hypothetical protein | - |
| E4187_RS01785 (E4187_01825) | - | 384550..386427 (-) | 1878 | WP_041207315.1 | integrase | - |
| E4187_RS01790 (E4187_01830) | - | 386437..388005 (-) | 1569 | WP_171269322.1 | site-specific integrase | - |
| E4187_RS01795 (E4187_01835) | - | 388002..389570 (-) | 1569 | WP_216370113.1 | site-specific integrase | - |
| E4187_RS23185 | - | 389814..389936 (+) | 123 | Protein_345 | hypothetical protein | - |
| E4187_RS23190 (E4187_01840) | - | 390021..390767 (+) | 747 | WP_365843053.1 | DUF4113 domain-containing protein | - |
| E4187_RS01805 (E4187_01845) | - | 390876..391196 (-) | 321 | WP_171269969.1 | helix-turn-helix transcriptional regulator | - |
| E4187_RS01810 (E4187_01850) | - | 391284..391724 (+) | 441 | WP_171269531.1 | hypothetical protein | - |
| E4187_RS01815 (E4187_01855) | - | 391962..392153 (+) | 192 | WP_017780887.1 | hypothetical protein | - |
| E4187_RS01820 (E4187_01860) | tetR | 392485..393120 (-) | 636 | WP_017780888.1 | tetracycline resistance transcriptional repressor TetR | - |
| E4187_RS01825 (E4187_01865) | tet(E) | 393200..394417 (+) | 1218 | WP_017780889.1 | tetracycline efflux MFS transporter Tet(E) | - |
| E4187_RS01830 (E4187_01870) | - | 394505..395173 (-) | 669 | WP_017780890.1 | hypothetical protein | - |
| E4187_RS22820 (E4187_01875) | - | 395332..395493 (-) | 162 | Protein_353 | IS5/IS1182 family transposase | - |
| E4187_RS22690 | - | 395711..396214 (-) | 504 | WP_216370115.1 | ATP-dependent RecD-like DNA helicase | - |
| E4187_RS01835 (E4187_01880) | - | 396229..397872 (-) | 1644 | WP_216370116.1 | AAA family ATPase | - |
| E4187_RS01840 (E4187_01885) | - | 397980..399148 (+) | 1169 | WP_085943968.1 | IS3-like element ISAeme20 family transposase | - |
| E4187_RS01845 (E4187_01890) | - | 399169..399573 (-) | 405 | WP_171269530.1 | VPA1267 family protein | - |
| E4187_RS01850 (E4187_01895) | - | 399573..400052 (-) | 480 | WP_049866848.1 | hypothetical protein | - |
| E4187_RS01855 (E4187_01900) | - | 400040..401917 (-) | 1878 | WP_041207315.1 | integrase | - |
| E4187_RS01860 (E4187_01905) | - | 401927..403495 (-) | 1569 | WP_171269322.1 | site-specific integrase | - |
| E4187_RS01865 (E4187_01910) | - | 403492..404814 (-) | 1323 | WP_041207317.1 | site-specific integrase | - |
| E4187_RS01870 (E4187_01915) | ssb | 404979..405554 (-) | 576 | WP_005328769.1 | single-stranded DNA-binding protein | Machinery gene |
Sequence
Protein
Download Length: 191 a.a. Molecular weight: 20953.37 Da Isoelectric Point: 5.9247
>NTDB_id=354403 E4187_RS01870 WP_005328769.1 404979..405554(-) (ssb) [Aeromonas media strain R25-3]
MASRGINKVILIGNLGQDPEVRYMPSGGAVTNITLATSDTWRDKQTGEQKERTEWHRVVFMGKLAEVAGEYLKKGSQVYV
EGKLQTRKWQDQSGQERYTTEVLVDSFTGVMQMLGGRPQGGAGQGMGGQQSQGNWGQPQQAAPQQAMQRPAAAPQQNMQP
QGGYGRPAQQPQSAPPVYNEPPMDFDDDIPF
MASRGINKVILIGNLGQDPEVRYMPSGGAVTNITLATSDTWRDKQTGEQKERTEWHRVVFMGKLAEVAGEYLKKGSQVYV
EGKLQTRKWQDQSGQERYTTEVLVDSFTGVMQMLGGRPQGGAGQGMGGQQSQGNWGQPQQAAPQQAMQRPAAAPQQNMQP
QGGYGRPAQQPQSAPPVYNEPPMDFDDDIPF
Nucleotide
Download Length: 576 bp
>NTDB_id=354403 E4187_RS01870 WP_005328769.1 404979..405554(-) (ssb) [Aeromonas media strain R25-3]
ATGGCCAGTCGAGGCATCAACAAAGTCATTCTGATCGGTAACCTGGGGCAAGACCCGGAAGTGCGCTACATGCCGAGCGG
CGGTGCCGTGACTAACATCACCCTGGCCACCTCCGACACCTGGCGCGACAAGCAGACCGGTGAGCAGAAAGAGCGAACCG
AGTGGCACCGCGTGGTGTTCATGGGCAAGCTGGCCGAAGTGGCCGGCGAGTACCTGAAGAAGGGTTCCCAGGTCTATGTC
GAAGGCAAGCTGCAGACCCGCAAGTGGCAGGATCAGAGTGGCCAGGAGCGTTACACCACAGAGGTGCTGGTCGACAGCTT
CACCGGCGTAATGCAGATGCTGGGCGGCCGTCCGCAAGGCGGCGCAGGCCAGGGCATGGGTGGTCAACAGTCCCAGGGCA
ACTGGGGTCAGCCACAACAGGCCGCCCCCCAGCAAGCGATGCAACGCCCGGCCGCCGCCCCGCAGCAGAATATGCAGCCG
CAGGGTGGTTACGGTCGTCCTGCCCAGCAGCCTCAGTCTGCACCGCCGGTCTACAACGAGCCGCCGATGGATTTCGACGA
CGATATCCCGTTCTAG
ATGGCCAGTCGAGGCATCAACAAAGTCATTCTGATCGGTAACCTGGGGCAAGACCCGGAAGTGCGCTACATGCCGAGCGG
CGGTGCCGTGACTAACATCACCCTGGCCACCTCCGACACCTGGCGCGACAAGCAGACCGGTGAGCAGAAAGAGCGAACCG
AGTGGCACCGCGTGGTGTTCATGGGCAAGCTGGCCGAAGTGGCCGGCGAGTACCTGAAGAAGGGTTCCCAGGTCTATGTC
GAAGGCAAGCTGCAGACCCGCAAGTGGCAGGATCAGAGTGGCCAGGAGCGTTACACCACAGAGGTGCTGGTCGACAGCTT
CACCGGCGTAATGCAGATGCTGGGCGGCCGTCCGCAAGGCGGCGCAGGCCAGGGCATGGGTGGTCAACAGTCCCAGGGCA
ACTGGGGTCAGCCACAACAGGCCGCCCCCCAGCAAGCGATGCAACGCCCGGCCGCCGCCCCGCAGCAGAATATGCAGCCG
CAGGGTGGTTACGGTCGTCCTGCCCAGCAGCCTCAGTCTGCACCGCCGGTCTACAACGAGCCGCCGATGGATTTCGACGA
CGATATCCCGTTCTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
69.744 |
100 |
0.712 |
| ssb | Glaesserella parasuis strain SC1401 |
53.968 |
98.953 |
0.534 |
| ssb | Neisseria meningitidis MC58 |
46.809 |
98.429 |
0.461 |
| ssb | Neisseria gonorrhoeae MS11 |
46.237 |
97.382 |
0.45 |