Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   E4186_RS20200 Genome accession   NZ_CP038444
Coordinates   4345898..4346473 (+) Length   191 a.a.
NCBI ID   WP_005328769.1    Uniprot ID   -
Organism   Aeromonas media strain T5-8     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4340898..4351473
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E4186_RS22805 - 4341509..4341634 (+) 126 WP_005328766.1 hypothetical protein -
  E4186_RS20190 (E4186_20405) uvrA 4341821..4344649 (-) 2829 WP_005328767.1 excinuclease ABC subunit UvrA -
  E4186_RS20195 (E4186_20410) - 4344744..4345382 (-) 639 WP_139750669.1 LuxR C-terminal-related transcriptional regulator -
  E4186_RS20200 (E4186_20415) ssb 4345898..4346473 (+) 576 WP_005328769.1 single-stranded DNA-binding protein Machinery gene
  E4186_RS20205 (E4186_20420) - 4346638..4347960 (+) 1323 WP_041207317.1 site-specific integrase -
  E4186_RS20210 (E4186_20425) - 4347957..4349525 (+) 1569 WP_171269322.1 site-specific integrase -
  E4186_RS20215 (E4186_20430) - 4349535..4351412 (+) 1878 WP_041207315.1 integrase -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 20953.37 Da        Isoelectric Point: 5.9247

>NTDB_id=354397 E4186_RS20200 WP_005328769.1 4345898..4346473(+) (ssb) [Aeromonas media strain T5-8]
MASRGINKVILIGNLGQDPEVRYMPSGGAVTNITLATSDTWRDKQTGEQKERTEWHRVVFMGKLAEVAGEYLKKGSQVYV
EGKLQTRKWQDQSGQERYTTEVLVDSFTGVMQMLGGRPQGGAGQGMGGQQSQGNWGQPQQAAPQQAMQRPAAAPQQNMQP
QGGYGRPAQQPQSAPPVYNEPPMDFDDDIPF

Nucleotide


Download         Length: 576 bp        

>NTDB_id=354397 E4186_RS20200 WP_005328769.1 4345898..4346473(+) (ssb) [Aeromonas media strain T5-8]
ATGGCCAGTCGAGGCATCAACAAAGTCATTCTGATCGGTAACCTGGGGCAAGACCCGGAAGTGCGCTACATGCCGAGCGG
CGGTGCCGTGACTAACATCACCCTGGCCACCTCCGACACCTGGCGCGACAAGCAGACCGGTGAGCAGAAAGAGCGAACCG
AGTGGCACCGCGTGGTGTTCATGGGCAAGCTGGCCGAAGTGGCCGGCGAGTACCTGAAGAAGGGTTCCCAGGTCTATGTC
GAAGGCAAGCTGCAGACCCGCAAGTGGCAGGATCAGAGTGGCCAGGAGCGTTACACCACAGAGGTGCTGGTCGACAGCTT
CACCGGCGTAATGCAGATGCTGGGCGGCCGTCCGCAAGGCGGCGCAGGCCAGGGCATGGGTGGTCAACAGTCCCAGGGCA
ACTGGGGTCAGCCACAACAGGCCGCCCCCCAGCAAGCGATGCAACGCCCGGCCGCCGCCCCGCAGCAGAATATGCAGCCG
CAGGGTGGTTACGGTCGTCCTGCCCAGCAGCCTCAGTCTGCACCGCCGGTCTACAACGAGCCGCCGATGGATTTCGACGA
CGATATCCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

69.744

100

0.712
  ssb Glaesserella parasuis strain SC1401

53.968

98.953

0.534
  ssb Neisseria meningitidis MC58

46.809

98.429

0.461
  ssb Neisseria gonorrhoeae MS11

46.237

97.382

0.45

Multiple sequence alignment