Detailed information NTG0354361

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: E4185_RS08605
• Genome accession: NZ_CP038443
• Coordinates: 1799605..1800477 (-)
• Length: 290 a.a.
• NCBI ID: WP_171273131.1
• Uniprot ID: -
• Organism: Aeromonas media strain R1-18
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1794605..1805477

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
E4185_RS08580 (E4185_08645)	secA	1794652..1797372 (+)	2721	WP_171273129.1	preprotein translocase subunit SecA	-
E4185_RS08585 (E4185_08650)	mutT	1797528..1797932 (+)	405	WP_043133317.1	8-oxo-dGTP diphosphatase MutT	-
E4185_RS08590 (E4185_08655)	yacG	1798008..1798202 (-)	195	WP_042649030.1	DNA gyrase inhibitor YacG	-
E4185_RS08595 (E4185_08660)	zapD	1798212..1798934 (-)	723	WP_161507570.1	cell division protein ZapD	-
E4185_RS08600 (E4185_08665)	coaE	1798972..1799586 (-)	615	WP_171273130.1	dephospho-CoA kinase	-
E4185_RS08605 (E4185_08670)	pilD	1799605..1800477 (-)	873	WP_171273131.1	A24 family peptidase	Machinery gene
E4185_RS08610 (E4185_08675)	pilC	1800558..1801799 (-)	1242	WP_043133310.1	type II secretion system F family protein	Machinery gene
E4185_RS08615 (E4185_08680)	pilB	1801929..1803635 (-)	1707	WP_171273132.1	PilB family type IVa pilus assembly ATPase TapB	Machinery gene
E4185_RS08620 (E4185_08685)	-	1803639..1804061 (-)	423	WP_171274319.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
E4185_RS08625 (E4185_08695)	nadC	1804386..1805249 (-)	864	WP_171273133.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32024.27 Da
• Isoelectric Point: 7.0918

>NTDB_id=354361 E4185_RS08605 WP_171273131.1 1799605..1800477(-) (pilD) [Aeromonas media strain R1-18]
MVPLIELAQGLPWLYLSLIFLFSLMIGSFLNVVIHRLPIMLEREWHADYRDYFGSEAATSPAEPYNLMVPRSRCPHCDHP
ISALENIPLLSWLWLKGRCRQCKAPISARYPLVELLTALLSVTVAATLTPGWGALAALALTWVLVALTFIDLDKMLLPDQ
LTLPLLWGGLLFNLAGGFVPLADAVIGAMAGYLVLWSLYWAFKLLTGKEGMGHGDFKLLAALGAWLGWQALPIVLLLSSL
VGAIIGIGLILLRNHHQGKPIPFGPYLAIAGWIALLWGDNITRWYLDIVL

Nucleotide

• Length: 873 bp

>NTDB_id=354361 E4185_RS08605 WP_171273131.1 1799605..1800477(-) (pilD) [Aeromonas media strain R1-18]
ATGGTGCCTCTGATCGAACTGGCCCAGGGCCTGCCCTGGCTCTATCTCTCCCTGATTTTTCTCTTCTCCCTGATGATTGG
CAGCTTCCTCAACGTGGTGATCCATCGCCTGCCCATCATGCTGGAGCGGGAGTGGCATGCAGACTACCGTGATTACTTCG
GCAGCGAGGCTGCCACTTCTCCCGCCGAACCTTACAACCTGATGGTACCTCGCTCTCGCTGCCCCCACTGCGATCACCCC
ATAAGCGCGCTGGAGAACATCCCCCTGCTGAGCTGGCTCTGGCTCAAGGGACGCTGCCGACAATGCAAGGCGCCAATTTC
GGCCCGCTATCCCCTGGTCGAGCTGCTGACCGCCCTGTTGTCGGTCACCGTCGCGGCGACCCTCACTCCCGGCTGGGGAG
CCCTGGCAGCCCTCGCACTGACCTGGGTACTGGTGGCCCTCACCTTCATCGATCTGGACAAGATGCTGCTGCCGGACCAG
CTCACACTGCCGCTGCTGTGGGGCGGTCTGTTGTTCAATCTGGCAGGCGGCTTTGTGCCGCTGGCCGATGCGGTGATCGG
CGCCATGGCTGGCTATCTGGTGCTCTGGAGCCTCTACTGGGCGTTCAAGCTGCTGACCGGCAAGGAGGGGATGGGCCATG
GCGACTTCAAGCTGCTGGCTGCACTTGGTGCCTGGCTAGGCTGGCAGGCACTGCCCATAGTGTTGCTGCTCTCCTCCCTG
GTCGGCGCCATCATCGGTATAGGGCTCATACTGCTGCGCAACCATCATCAGGGCAAACCCATCCCCTTTGGCCCCTACCT
CGCCATCGCGGGCTGGATAGCGCTGCTGTGGGGGGATAACATCACCCGCTGGTATCTGGACATCGTTCTCTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-126)

• Type IV leader peptidase family (Peptidase_A24) (139-247)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	61.404	98.276	0.603
pilD	Vibrio campbellii strain DS40M4	56.055	99.655	0.559
pilD	Acinetobacter nosocomialis M2	52.518	95.862	0.503
pilD	Acinetobacter baumannii D1279779	52.158	95.862	0.5
pilD	Neisseria gonorrhoeae MS11	49.049	90.69	0.445