Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   E4185_RS04470 Genome accession   NZ_CP038443
Coordinates   922227..922802 (+) Length   191 a.a.
NCBI ID   WP_005328769.1    Uniprot ID   -
Organism   Aeromonas media strain R1-18     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 917227..927802
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E4185_RS22645 - 917837..917962 (+) 126 WP_005328766.1 hypothetical protein -
  E4185_RS04460 (E4185_04475) uvrA 918149..920977 (-) 2829 WP_171272785.1 excinuclease ABC subunit UvrA -
  E4185_RS04465 (E4185_04480) - 921072..921710 (-) 639 WP_139750669.1 LuxR C-terminal-related transcriptional regulator -
  E4185_RS04470 (E4185_04485) ssb 922227..922802 (+) 576 WP_005328769.1 single-stranded DNA-binding protein Machinery gene
  E4185_RS04475 (E4185_04490) - 922959..923729 (+) 771 WP_043131239.1 transporter substrate-binding domain-containing protein -
  E4185_RS22650 (E4185_04495) - 923778..923900 (-) 123 WP_080675244.1 hypothetical protein -
  E4185_RS04480 (E4185_04500) yjbD 924241..924525 (+) 285 WP_025328558.1 DUF3811 domain-containing protein -
  E4185_RS04485 (E4185_04505) cspA 924919..925131 (+) 213 WP_025328559.1 RNA chaperone/antiterminator CspA -
  E4185_RS04490 (E4185_04510) - 925369..926754 (-) 1386 WP_171272786.1 ATP-binding protein -
  E4185_RS04495 (E4185_04515) - 926761..927483 (-) 723 WP_041207099.1 response regulator -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 20953.37 Da        Isoelectric Point: 5.9247

>NTDB_id=354354 E4185_RS04470 WP_005328769.1 922227..922802(+) (ssb) [Aeromonas media strain R1-18]
MASRGINKVILIGNLGQDPEVRYMPSGGAVTNITLATSDTWRDKQTGEQKERTEWHRVVFMGKLAEVAGEYLKKGSQVYV
EGKLQTRKWQDQSGQERYTTEVLVDSFTGVMQMLGGRPQGGAGQGMGGQQSQGNWGQPQQAAPQQAMQRPAAAPQQNMQP
QGGYGRPAQQPQSAPPVYNEPPMDFDDDIPF

Nucleotide


Download         Length: 576 bp        

>NTDB_id=354354 E4185_RS04470 WP_005328769.1 922227..922802(+) (ssb) [Aeromonas media strain R1-18]
ATGGCCAGTCGAGGCATCAACAAAGTCATTCTGATCGGTAACCTGGGGCAAGACCCGGAAGTGCGCTACATGCCGAGCGG
CGGTGCCGTGACTAACATCACCCTGGCCACCTCCGACACCTGGCGCGACAAGCAGACCGGTGAGCAGAAAGAGCGAACCG
AGTGGCACCGCGTGGTGTTCATGGGCAAGCTGGCCGAAGTGGCCGGCGAGTACCTGAAGAAGGGTTCCCAGGTCTATGTC
GAAGGCAAGCTGCAGACCCGCAAGTGGCAGGATCAGAGTGGTCAGGAGCGCTACACCACAGAGGTGCTGGTCGACAGCTT
CACCGGCGTGATGCAGATGCTGGGCGGCCGTCCGCAAGGCGGCGCAGGCCAGGGCATGGGTGGTCAACAGTCCCAGGGCA
ACTGGGGTCAGCCACAACAGGCCGCCCCCCAGCAGGCGATGCAACGCCCGGCCGCCGCCCCGCAGCAGAATATGCAGCCG
CAGGGTGGTTACGGTCGTCCTGCCCAGCAGCCTCAGTCTGCACCGCCGGTCTACAACGAGCCGCCGATGGATTTCGATGA
CGATATCCCCTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

69.744

100

0.712
  ssb Glaesserella parasuis strain SC1401

53.968

98.953

0.534
  ssb Neisseria meningitidis MC58

46.809

98.429

0.461
  ssb Neisseria gonorrhoeae MS11

46.237

97.382

0.45

Multiple sequence alignment