Detailed information NTG0354340

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: E4184_RS19750
• Genome accession: NZ_CP038441
• Coordinates: 4269153..4270025 (+)
• Length: 290 a.a.
• NCBI ID: WP_171276944.1
• Uniprot ID: -
• Organism: Aeromonas media strain T0.1-19
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4264153..4275025

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
E4184_RS19730 (E4184_19885)	nadC	4264365..4265228 (+)	864	WP_171276941.1	carboxylating nicotinate-nucleotide diphosphorylase	-
E4184_RS19735 (E4184_19895)	-	4265541..4265990 (+)	450	WP_171276942.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
E4184_RS19740 (E4184_19900)	pilB	4265994..4267700 (+)	1707	WP_171276943.1	PilB family type IVa pilus assembly ATPase TapB	Machinery gene
E4184_RS19745 (E4184_19905)	pilC	4267831..4269072 (+)	1242	WP_106885656.1	type II secretion system F family protein	Machinery gene
E4184_RS19750 (E4184_19910)	pilD	4269153..4270025 (+)	873	WP_171276944.1	A24 family peptidase	Machinery gene
E4184_RS19755 (E4184_19915)	coaE	4270044..4270658 (+)	615	WP_171276945.1	dephospho-CoA kinase	-
E4184_RS19760 (E4184_19920)	zapD	4270696..4271418 (+)	723	WP_162520171.1	cell division protein ZapD	-
E4184_RS19765 (E4184_19925)	yacG	4271428..4271622 (+)	195	WP_025328449.1	DNA gyrase inhibitor YacG	-
E4184_RS19770 (E4184_19930)	mutT	4271697..4272101 (-)	405	WP_106885652.1	8-oxo-dGTP diphosphatase MutT	-
E4184_RS19775 (E4184_19935)	secA	4272257..4274977 (-)	2721	WP_171276946.1	preprotein translocase subunit SecA	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 31934.22 Da
• Isoelectric Point: 6.6290

>NTDB_id=354340 E4184_RS19750 WP_171276944.1 4269153..4270025(+) (pilD) [Aeromonas media strain T0.1-19]
MVPLIELAQGLPWLYLSLVFLFSLMVGSFLNVVIHRLPIMLEREWQAEYSDYFGSEVATSPAEPYNLMVPRSRCPHCDHP
IGALENIPLLSWLWLKGRCRQCKTPISARYPLVELLTALLSVAVAATLAPGWGALAALLLTWVLVALTFIDLDKMLLPDQ
LTLPLLWGGLLFNLAGGLVPLADAVIGAMAGYLVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIVLLLSSL
VGAIIGIGLILLRNHHQGKPIPFGPYLAIAGWIALLWGDNITRWYLDIVL

Nucleotide

• Length: 873 bp

>NTDB_id=354340 E4184_RS19750 WP_171276944.1 4269153..4270025(+) (pilD) [Aeromonas media strain T0.1-19]
ATGGTGCCTCTGATCGAACTGGCCCAGGGCCTGCCCTGGCTCTATCTCTCCCTGGTTTTTCTCTTCTCCCTGATGGTTGG
CAGCTTTCTGAACGTGGTGATCCATCGCCTGCCCATCATGCTGGAGCGGGAGTGGCAGGCCGAATACAGTGACTACTTCG
GCAGCGAAGTGGCCACCTCCCCCGCCGAGCCCTACAACCTGATGGTGCCGCGCTCCCGCTGCCCGCACTGCGATCACCCC
ATAGGCGCACTGGAGAACATCCCCCTGCTGAGCTGGCTCTGGCTCAAGGGGCGCTGCCGGCAATGCAAGACGCCCATCTC
GGCCCGCTATCCCCTGGTCGAGCTGCTGACCGCCCTGTTGTCGGTCGCCGTCGCCGCGACCCTGGCTCCAGGATGGGGCG
CCCTGGCCGCGCTCCTGCTGACCTGGGTACTGGTGGCCCTCACCTTCATCGATCTGGACAAGATGTTGCTGCCGGACCAA
CTCACCTTGCCGCTGCTGTGGGGCGGTCTGCTGTTCAATCTGGCGGGGGGCTTAGTGCCACTGGCCGATGCGGTGATCGG
TGCCATGGCCGGCTATCTGGTGCTCTGGAGCCTCTACTGGGCGTTCAAGCTGCTGACCGGCAAGGAGGGGATGGGCTATG
GCGACTTCAAGCTGCTGGCGGCGCTCGGTGCCTGGCTGGGCTGGCAGGCGCTGCCCATAGTGCTGCTGCTCTCGTCACTG
GTCGGCGCCATCATCGGCATAGGGCTCATACTGCTGCGCAACCATCATCAGGGCAAACCCATCCCCTTTGGCCCCTATCT
CGCCATCGCGGGCTGGATAGCGCTGCTGTGGGGGGATAACATCACCCGCTGGTATCTGGACATAGTTCTCTAG

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-126)

• Type IV leader peptidase family (Peptidase_A24) (139-247)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	62.105	98.276	0.61
pilD	Vibrio campbellii strain DS40M4	56.747	99.655	0.566
pilD	Acinetobacter nosocomialis M2	53.597	95.862	0.514
pilD	Acinetobacter baumannii D1279779	53.237	95.862	0.51
pilD	Neisseria gonorrhoeae MS11	49.248	91.724	0.452